Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 0.0e+00 1512.3 829 100.0
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-268 930.2 637 82.1
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 6.3e-253 877.9 633 79.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 6.5e-250 867.8 633 78.5
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 9.8e-214 747.7 632 70.9
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.2e-190 671.0 526 73.6
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 6.4e-181 638.6 654 61.0
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.9e-173 613.2 654 59.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.4e-172 610.1 651 59.1
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.9e-171 605.1 661 57.9
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.8e-170 604.0 641 57.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.0e-170 603.2 656 56.9
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 3.9e-170 602.8 653 57.7
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.1e-169 601.3 656 55.5
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.9e-169 600.5 661 57.5
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 3.3e-169 599.7 650 59.8
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 7.4e-169 598.6 660 57.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 9.6e-169 598.2 656 56.9
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 4.8e-168 595.9 661 57.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 4.8e-168 595.9 653 56.2
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.1e-167 594.7 654 60.1
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.1e-167 594.7 652 56.3
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 3.1e-167 593.2 658 57.9
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 6.9e-167 592.0 648 53.7
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 9.0e-167 591.7 651 56.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 3.4e-166 589.7 651 55.6
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.4e-166 589.7 658 56.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 5.8e-166 589.0 655 59.1
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 5.8e-166 589.0 655 56.5
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.3e-165 587.8 656 56.4
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.2e-165 587.0 659 55.7
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.9e-165 585.9 658 55.6
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.1e-164 584.7 660 55.0
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 2.5e-164 583.6 654 55.2
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 9.3e-164 581.6 652 55.4
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.2e-163 581.3 654 57.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 3.5e-163 579.7 646 54.5
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 4.6e-163 579.3 652 55.5
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 4.6e-163 579.3 652 53.7
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.0e-163 578.9 656 55.9
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 6.0e-163 578.9 566 59.4
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 1.3e-162 577.8 640 56.9
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-162 577.4 656 55.9
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.3e-162 577.0 652 56.1
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.9e-162 576.2 656 55.5
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 5.1e-162 575.9 652 57.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-161 574.7 656 55.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.1e-161 574.7 656 58.5
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.1e-161 574.7 656 58.5
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.3e-161 572.8 652 58.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.7e-161 572.4 645 51.9
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 9.6e-161 571.6 638 55.0
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.3e-160 571.2 646 54.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 1.6e-160 570.9 651 54.1
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 2.8e-160 570.1 652 54.6
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.8e-160 569.3 656 56.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.3e-160 568.9 661 54.8
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.8e-159 567.4 656 55.0
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.4e-159 567.0 661 54.6
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.1e-159 566.6 643 55.4
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 5.3e-159 565.8 644 57.5
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 5.3e-159 565.8 567 58.7
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.2e-158 564.7 643 55.8
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.0e-158 563.9 648 54.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.6e-158 563.5 657 54.3
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 5.9e-158 562.4 640 54.7
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 5.9e-158 562.4 665 52.3
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 7.6e-158 562.0 540 58.9
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 5.0e-157 559.3 648 54.0
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 5.0e-157 559.3 643 55.4
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 6.5e-157 558.9 643 55.2
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.4e-156 557.8 652 55.5
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.9e-156 557.4 650 54.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.5e-156 557.0 669 56.4
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 4.2e-156 556.2 634 53.8
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 4.2e-156 556.2 648 55.4
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 5.5e-156 555.8 648 54.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 5.5e-156 555.8 645 54.3
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.2e-155 554.7 530 60.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 4.6e-155 552.7 649 55.3
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 6.1e-155 552.4 533 62.3
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 3.9e-154 549.7 661 55.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 6.7e-154 548.9 649 51.5
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.3e-153 546.6 651 53.1
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 5.7e-153 545.8 649 52.5
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.2e-152 543.9 640 53.8
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 3.7e-152 543.1 644 51.4
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.8e-152 542.7 652 56.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.4e-151 540.4 638 51.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 3.1e-151 540.0 544 56.4
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 3.1e-151 540.0 544 56.4
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.1e-151 540.0 535 60.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.1e-151 540.0 535 60.6
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 6.9e-151 538.9 603 54.2
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.0e-150 537.3 647 52.9
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.6e-150 537.0 544 56.6
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 2.6e-150 537.0 544 56.6
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.6e-150 537.0 645 50.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 4.5e-150 536.2 654 51.5
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-149 534.6 635 51.5
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 8.5e-149 531.9 639 52.4
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.6e-147 527.7 634 54.9
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.8e-146 524.2 648 49.2
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.9e-146 523.1 644 53.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.6e-145 520.4 657 51.3
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.6e-145 520.4 648 49.1
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-144 516.5 648 48.8
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-143 515.0 648 48.6
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 3.1e-143 513.5 648 49.1
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.5e-142 511.1 650 52.8
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.0e-142 510.8 531 57.8
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.0e-141 508.4 633 51.0
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.0e-141 508.4 537 57.5
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 8.5e-141 505.4 644 52.2
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.9e-140 504.2 634 50.8
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 3.6e-139 500.0 642 49.8
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 6.1e-139 499.2 616 49.7
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.1e-139 499.2 547 57.8
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.0e-138 498.4 643 48.1
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.8e-138 497.7 653 49.8
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.7e-138 495.7 647 50.1
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 2.0e-137 494.2 648 48.6
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.6e-137 493.8 633 50.7
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 3.3e-137 493.4 549 55.4
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.7e-136 490.0 631 50.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 3.7e-136 490.0 663 46.2
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 2.4e-135 487.3 642 48.9
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.7e-133 481.1 660 47.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.2e-132 476.9 648 46.3
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.2e-131 474.9 652 47.9
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.6e-131 474.6 654 47.1
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.0e-130 471.9 628 51.3
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.0e-130 470.3 655 48.1
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 8.8e-130 468.8 654 46.8
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.1e-127 460.3 536 54.3
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 3.1e-127 460.3 535 52.3
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.2e-126 458.4 548 51.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.6e-126 458.0 543 52.9
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.9e-125 453.8 534 52.2
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.8e-125 453.4 648 46.0
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.8e-125 453.4 541 51.6
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 7.2e-124 449.1 544 51.5
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 9.4e-124 448.7 543 50.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 1.2e-123 448.4 538 51.7
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 2.7e-123 447.2 552 51.1
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.8e-120 437.2 620 44.4
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-109 401.4 646 44.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.4e-106 391.7 554 46.2
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.7e-96 358.2 536 44.2
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.1e-95 355.5 549 42.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 4.7e-91 340.1 395 59.5
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 3.0e-85 320.9 419 48.7
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.3e-80 305.4 536 42.0
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 4.1e-79 300.4 396 51.3
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.1e-79 300.4 394 50.0
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.4e-73 280.8 547 39.9
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.1e-70 271.6 316 52.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 3.9e-69 267.3 642 36.3
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.1e-66 257.7 222 65.8
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 4.9e-64 250.4 528 38.1
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 6.2e-59 233.4 380 40.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 4.8e-51 207.2 566 31.4
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 3.4e-49 201.1 606 34.0
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 6.0e-46 190.3 145 71.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 4.5e-41 174.1 277 39.4
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.9e-25 120.6 100 59.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.1e-23 116.3 79 73.4
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 3.0e-21 108.2 66 77.3
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.1e-20 106.3 94 54.3
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.9e-16 91.7 92 46.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.9e-15 89.0 289 27.7
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.2e-15 88.2 227 34.8
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 7.2e-15 87.0 46 84.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.4e-13 82.8 55 67.3
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.0e-13 81.3 78 56.4
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.1e-10 71.6 69 53.6
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.0e-08 66.6 386 26.4
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 2.5e-07 62.0 69 55.1
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 4.2e-07 61.2 394 21.8


User provided reference genes

Program Settings