Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 2.8e-149 531.9 278 100.0
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 7.8e-139 497.3 271 94.8
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 2.5e-105 386.0 271 74.5
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 1.1e-79 300.8 271 62.7
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 5.3e-79 298.5 271 60.1
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 1.5e-70 270.4 281 55.5
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 8.8e-66 254.6 276 52.2
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 1.8e-50 203.8 267 48.3
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 1.6e-35 154.1 290 37.6
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 2.7e-35 153.3 283 38.2
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 4.8e-32 142.5 295 38.6
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 5.4e-31 139.0 296 34.5
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 7.0e-31 138.7 300 36.7
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.0e-29 134.8 285 35.8
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.7e-29 134.0 293 37.2
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 1.7e-29 134.0 277 38.3
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 2.3e-29 133.7 286 36.4
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 2.9e-29 133.3 299 38.5
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 2.9e-29 133.3 289 36.0
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 3.8e-29 132.9 293 37.2
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 3.8e-29 132.9 293 36.9
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 3.8e-29 132.9 292 36.0
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 6.6e-29 132.1 293 35.2
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 6.6e-29 132.1 277 36.5
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 8.6e-29 131.7 286 33.9
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 8.6e-29 131.7 293 35.2
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 1.5e-28 131.0 300 36.0
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 1.9e-28 130.6 287 33.8
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 4.2e-28 129.4 301 34.2
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 9.5e-28 128.3 286 33.9
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 1.6e-27 127.5 286 35.0
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.1e-27 127.1 297 33.3
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 3.6e-27 126.3 292 33.9
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 3.6e-27 126.3 284 37.0
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 4.7e-27 125.9 292 35.3
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.7e-27 125.9 293 32.8
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 6.1e-27 125.6 303 32.3
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 8.0e-27 125.2 298 35.9
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 1.4e-26 124.4 290 34.5
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 1.4e-26 124.4 301 33.6
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.4e-26 124.4 292 33.9
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 1.8e-26 124.0 300 33.7
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 1.8e-26 124.0 294 34.4
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 2.3e-26 123.6 299 33.4
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 4.0e-26 122.9 278 34.5
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 5.2e-26 122.5 292 32.5
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 6.8e-26 122.1 298 36.6
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 8.9e-26 121.7 292 31.8
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.0e-25 120.6 292 36.3
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 4.4e-25 119.4 286 35.0
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 4.4e-25 119.4 298 34.6
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 5.7e-25 119.0 291 31.6
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.3e-24 117.9 290 31.4
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.7e-24 117.5 287 36.6
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.8e-24 116.7 286 34.3
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 3.7e-24 116.3 291 35.4
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 3.7e-24 116.3 282 34.4
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 4.9e-24 115.9 304 33.2
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 8.3e-24 115.2 308 34.4
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.1e-23 114.8 279 33.0
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.4e-23 114.4 296 32.4
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 3.2e-23 113.2 283 31.8
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 4.5e-22 109.4 325 28.9
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.3e-21 107.8 325 29.5
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 1.7e-21 107.5 305 31.8
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 3.9e-21 106.3 278 30.9
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 5.0e-21 105.9 293 32.1
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 6.6e-21 105.5 284 29.2
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 1.5e-20 104.4 291 32.6
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 3.3e-20 103.2 293 31.1
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 3.3e-20 103.2 299 33.4
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 7.3e-20 102.1 293 31.4
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 7.3e-20 102.1 288 32.6
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 9.5e-20 101.7 293 32.4
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 1.2e-19 101.3 296 30.1
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 1.2e-19 101.3 291 33.0
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 1.6e-19 100.9 294 31.3
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 1.6e-19 100.9 295 32.5
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 1.6e-19 100.9 304 31.6
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.7e-19 99.4 283 31.4
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 6.1e-19 99.0 266 36.8
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 8.0e-19 98.6 296 29.4
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.4e-18 97.8 295 29.5
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.3e-18 97.1 275 29.1
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.3e-18 97.1 275 29.1
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.1e-18 96.7 308 27.6
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 6.8e-18 95.5 295 30.8
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 6.8e-18 95.5 289 31.8
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.2e-17 94.7 289 30.1
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 1.5e-17 94.4 280 31.8
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 5.8e-17 92.4 282 29.4
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 7.5e-17 92.0 289 30.4
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 7.5e-17 92.0 279 29.0
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 9.8e-17 91.7 290 30.7
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 1.3e-16 91.3 287 31.0
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 1.7e-16 90.9 287 30.0
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.7e-16 90.9 285 31.6
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 2.2e-16 90.5 291 29.2
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 3.7e-16 89.7 291 29.2
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 6.4e-16 89.0 301 28.9
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 6.4e-16 89.0 291 30.9
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 8.3e-16 88.6 291 29.2
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.4e-15 87.8 278 29.1
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 2.4e-15 87.0 277 32.1
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 3.2e-15 86.7 284 31.7
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 4.1e-15 86.3 289 29.1
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 5.4e-15 85.9 278 28.8
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 7.0e-15 85.5 297 29.6
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 7.0e-15 85.5 288 27.8
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 7.0e-15 85.5 307 28.0
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.2e-14 84.7 271 29.2
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 1.6e-14 84.3 296 30.7
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 7.8e-14 82.0 279 25.8
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 1.7e-13 80.9 286 28.0
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 3.0e-13 80.1 289 27.3
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 3.0e-13 80.1 289 27.3
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 3.0e-13 80.1 289 27.3
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 3.0e-13 80.1 302 26.5
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 3.0e-13 80.1 282 27.7
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 1.5e-12 77.8 280 26.4
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 1.9e-12 77.4 306 30.4
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 1.9e-12 77.4 290 27.6
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 1.9e-12 77.4 290 27.6
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 4.3e-12 76.3 288 26.7
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 4.3e-12 76.3 303 27.7
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 1.6e-11 74.3 272 29.0
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 8.0e-11 72.0 276 27.5
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 8.0e-11 72.0 277 27.8
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 1.1e-10 71.6 284 27.8
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 1.1e-10 71.6 282 28.0
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 1.4e-10 71.2 275 27.6
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 3.1e-10 70.1 215 33.0
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 3.1e-10 70.1 283 28.3
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 5.2e-10 69.3 272 28.3
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 5.2e-10 69.3 230 29.1
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.5e-09 67.8 272 26.1
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 5.8e-09 65.9 268 30.2
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 7.5e-09 65.5 279 28.3
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 1.7e-08 64.3 154 35.1
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.7e-08 63.2 185 28.6
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.1e-07 61.6 292 28.1
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 5.4e-07 59.3 43 60.5
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 2.7e-06 57.0 49 59.2
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.5e-06 56.6 122 32.8
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 4.6e-06 56.2 255 27.5
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 6.0e-06 55.8 55 47.3


User provided reference genes

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