Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 0.0e+00 1256.9 633 100.0
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.3e-308 1061.6 730 75.1
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.8e-291 1003.8 570 89.1
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 1.2e-280 969.5 703 71.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.1e-257 893.3 726 64.9
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 2.0e-254 882.5 724 62.7
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.7e-254 880.2 724 62.4
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.3e-253 879.8 724 62.4
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 4.8e-253 877.9 730 62.9
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.2e-251 873.2 704 62.8
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 4.5e-251 871.3 727 61.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.7e-250 869.4 727 61.3
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 5.1e-247 857.8 704 62.2
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.1e-246 856.7 724 60.9
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 8.2e-245 850.5 725 61.5
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.4e-244 849.7 731 60.7
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 3.1e-244 848.6 725 61.5
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.1e-244 848.6 720 60.3
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 9.1e-244 847.0 724 60.1
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.5e-243 846.3 718 62.1
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 2.6e-243 845.5 733 59.5
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 5.9e-243 844.3 715 61.3
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 6.5e-242 840.9 702 61.7
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 8.5e-242 840.5 875 55.4
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 7.2e-241 837.4 709 59.7
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.6e-240 836.3 707 59.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 8.0e-240 833.9 724 59.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.0e-239 833.6 719 60.1
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.4e-239 833.2 727 59.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.8e-239 832.8 724 59.3
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 2.3e-239 832.4 724 60.4
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 5.2e-239 831.2 718 59.1
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.1e-238 830.1 720 58.8
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.5e-238 829.7 723 59.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 7.4e-238 827.4 721 59.2
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.3e-237 826.6 725 60.4
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.7e-237 826.2 712 59.7
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 2.2e-237 825.9 726 59.1
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 2.8e-237 825.5 722 58.4
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 4.8e-237 824.7 723 58.5
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 4.8e-237 824.7 719 59.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.4e-236 822.4 724 58.7
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 9.1e-236 820.5 726 58.5
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 5.9e-235 817.8 721 59.2
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 7.7e-235 817.4 728 58.4
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 7.7e-235 817.4 728 58.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-234 816.6 725 58.8
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 3.8e-234 815.1 707 58.8
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 3.2e-233 812.0 735 57.3
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 3.6e-232 808.5 708 58.8
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 9.8e-230 800.4 731 56.9
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.7e-229 799.7 716 57.5
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 3.7e-229 798.5 628 64.3
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 2.4e-228 795.8 704 57.5
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 5.4e-228 794.7 724 56.8
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 5.4e-228 794.7 700 57.6
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 7.0e-228 794.3 718 56.8
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 1.2e-227 793.5 725 56.0
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 2.0e-227 792.7 718 57.1
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.3e-226 790.0 728 57.6
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 3.8e-226 788.5 710 56.3
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 8.5e-226 787.3 700 57.0
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.9e-225 786.2 661 61.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-224 783.5 705 56.9
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 1.2e-224 783.5 705 56.9
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 2.1e-224 782.7 718 56.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 2.7e-224 782.3 726 55.4
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.7e-224 782.3 716 57.0
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 6.1e-224 781.2 696 59.6
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 8.0e-224 780.8 726 55.9
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-223 780.0 702 57.0
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.8e-223 779.6 541 70.4
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 4.0e-223 778.5 724 55.9
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 6.8e-223 777.7 700 55.9
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 8.8e-223 777.3 702 56.8
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.6e-222 775.8 698 58.6
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 5.4e-220 768.1 663 59.7
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 2.0e-219 766.1 726 54.8
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.0e-218 763.8 705 56.6
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.2e-216 756.9 708 54.4
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.0e-215 751.9 729 54.2
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 5.2e-215 751.5 555 67.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 2.0e-214 749.6 701 56.6
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 2.9e-213 745.7 555 67.2
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.9e-213 745.7 712 54.2
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 6.6e-210 734.6 678 58.0
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 2.8e-208 729.2 735 54.6
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 8.0e-208 727.6 646 57.7
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 4.9e-205 718.4 731 53.1
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 6.4e-205 718.0 992 44.2
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 5.4e-204 714.9 716 52.7
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.8e-199 699.9 660 56.1
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 2.1e-187 659.8 560 58.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.2e-184 650.6 986 42.1
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.4e-182 642.5 588 56.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.8e-168 595.5 703 48.6
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.3e-165 587.4 455 65.5
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 5.3e-151 538.9 726 41.3
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.1e-135 486.5 701 40.7
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.3e-130 470.3 482 51.7
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 8.2e-128 461.8 363 62.8
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 5.3e-119 432.6 642 38.6
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 2.3e-98 364.0 374 50.0
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 3.2e-95 353.6 225 76.0
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 8.6e-93 345.5 254 66.1
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.6e-91 341.3 433 44.6
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 8.1e-83 312.4 289 56.1
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 3.1e-82 310.5 246 59.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.9e-72 277.3 166 83.1
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 3.8e-64 250.4 263 50.6
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 6.9e-58 229.6 261 47.1
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-56 224.6 150 64.0
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 3.5e-38 164.1 153 55.6
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.5e-33 148.7 235 35.3
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 6.5e-32 143.3 112 61.6
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.0e-29 136.0 213 37.1
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.8e-29 135.2 214 34.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-26 125.2 90 66.7
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-25 121.7 87 64.4
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.6e-25 121.3 90 65.6
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.9e-24 117.9 139 40.3
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 2.7e-22 111.3 108 56.5
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 9.7e-20 102.8 72 68.1
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.8e-18 98.6 66 65.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 2.4e-18 98.2 61 68.9
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 5.3e-18 97.1 52 80.8
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.6e-17 94.7 119 49.6
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 8.5e-16 89.7 61 72.1
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 8.5e-16 89.7 65 63.1
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-15 87.4 169 32.5
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.6e-14 85.5 97 49.5
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-13 82.0 238 29.0
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 5.2e-13 80.5 57 59.6
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 6.7e-13 80.1 106 41.5
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 2.0e-12 78.6 56 64.3
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 2.0e-12 78.6 56 64.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 2.0e-12 78.6 109 46.8
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 7.4e-12 76.6 56 62.5
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 3.7e-11 74.3 60 58.3
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 8.2e-11 73.2 55 67.3
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.1e-10 72.8 39 76.9
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.1e-10 72.8 70 54.3
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 2.4e-10 71.6 106 39.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 7.0e-10 70.1 106 38.7
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 7.0e-10 70.1 71 52.1
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 9.1e-10 69.7 50 62.0
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-09 69.3 35 85.7
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.7e-08 65.5 48 62.5
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.9e-08 64.7 38 76.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 8.5e-08 63.2 80 37.5
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 3.2e-07 61.2 72 48.6
MCO04G172 Micromonas commoda HOM05D004619 ORTHO05D005738 3.6e-06 57.8 367 23.4


User provided reference genes

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