Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 0.0e+00 1214.9 601 100.0
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 0.0e+00 1186.8 604 97.7
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 8.2e-295 1016.5 631 80.7
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 5.9e-293 1010.4 585 85.0
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 6.7e-289 996.9 627 79.3
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 7.7e-277 956.8 605 77.4
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 2.6e-272 941.8 605 76.7
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 7.5e-272 940.3 608 74.7
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.2e-270 933.3 603 76.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.7e-269 931.8 607 75.3
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 4.5e-269 931.0 605 76.2
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.9e-269 930.6 604 76.5
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.9e-268 928.3 604 75.0
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 3.8e-268 927.9 604 74.8
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 8.6e-268 926.8 604 76.3
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.5e-267 926.0 605 76.5
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 4.3e-267 924.5 604 75.0
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.2e-266 922.9 604 74.3
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.1e-266 922.2 600 76.0
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 3.6e-266 921.4 601 74.9
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 4.7e-266 921.0 604 74.2
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.1e-266 920.6 604 74.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 6.1e-266 920.6 604 75.5
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 8.0e-266 920.2 605 74.9
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.8e-265 919.1 607 74.1
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 3.0e-265 918.3 602 75.2
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.5e-264 916.0 602 74.8
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 1.5e-264 916.0 601 74.5
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 2.0e-264 915.6 602 75.1
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 9.8e-264 913.3 604 73.0
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 1.3e-263 912.9 605 73.4
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.3e-263 912.9 620 74.5
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.7e-263 911.4 604 73.5
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.1e-262 909.8 604 75.3
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 2.4e-262 908.7 604 73.5
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 3.2e-262 908.3 616 73.5
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.2e-262 908.3 604 73.2
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 4.1e-262 907.9 606 74.4
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 5.4e-262 907.5 616 73.4
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 9.2e-262 906.7 582 75.8
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.2e-261 906.4 604 73.0
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.6e-261 906.0 615 74.3
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.0e-260 903.3 615 73.8
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.3e-260 902.9 605 72.9
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.3e-260 902.9 606 74.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 2.3e-260 902.1 617 72.6
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 5.0e-260 901.0 617 72.6
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 5.0e-260 901.0 605 73.2
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 6.6e-260 900.6 622 71.7
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 1.1e-259 899.8 609 73.1
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.1e-259 899.8 614 73.6
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.5e-259 899.4 617 72.6
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.3e-259 897.9 617 72.3
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 4.3e-259 897.9 614 73.0
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.6e-258 896.0 604 72.2
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.1e-258 895.6 614 73.3
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 2.8e-258 895.2 615 73.3
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 8.0e-258 893.6 604 71.9
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.8e-257 892.5 604 72.2
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.8e-257 892.5 604 72.2
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 2.3e-257 892.1 614 73.3
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 3.1e-257 891.7 604 72.2
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 3.4e-256 888.3 615 73.5
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 6.4e-255 884.0 605 71.7
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.6e-253 879.4 611 70.7
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 2.0e-253 879.0 608 71.4
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 2.7e-253 878.6 609 73.2
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.7e-250 867.8 586 71.7
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 6.2e-250 867.5 636 69.2
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.1e-249 866.7 607 71.8
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.8e-249 865.9 604 70.5
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 2.3e-249 865.5 616 69.8
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.5e-248 862.8 608 70.1
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 7.5e-248 860.5 615 69.3
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 8.3e-247 857.1 604 69.7
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 5.4e-246 854.4 641 67.6
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.7e-245 852.0 604 69.2
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.3e-244 849.0 604 69.2
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 6.6e-244 847.4 614 69.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 2.8e-242 842.0 581 71.4
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.8e-241 839.3 597 70.0
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 5.2e-241 837.8 604 68.2
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 2.0e-240 835.9 601 70.2
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 3.4e-240 835.1 583 70.8
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 4.4e-240 834.7 740 60.4
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 5.8e-240 834.3 633 68.1
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 1.3e-239 833.2 603 67.7
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 2.3e-236 822.4 617 66.1
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 8.6e-236 820.5 604 67.4
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 2.8e-234 815.5 604 68.2
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 3.6e-234 815.1 534 73.8
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 6.2e-234 814.3 561 73.6
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 6.0e-229 797.7 593 69.0
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.0e-228 797.0 608 66.9
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 5.6e-227 791.2 615 64.7
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.6e-227 790.4 604 67.1
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.1e-225 786.9 602 67.6
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.9e-223 778.9 613 64.1
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 4.2e-222 775.0 611 65.6
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 6.0e-221 771.2 528 72.2
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 8.7e-220 767.3 604 63.2
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 3.6e-218 761.9 611 64.0
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 3.1e-217 758.8 611 64.0
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 2.2e-215 752.7 545 71.6
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 3.8e-215 751.9 587 64.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 4.6e-213 745.0 537 69.6
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 3.3e-211 738.8 608 62.7
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 6.2e-210 734.6 608 61.7
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.4e-208 728.8 603 60.5
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 5.1e-204 714.9 536 67.7
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 5.1e-204 714.9 796 51.5
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.6e-202 709.9 608 61.3
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 2.1e-202 709.5 466 76.4
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 1.8e-201 706.4 615 61.3
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.9e-199 699.1 497 70.4
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.1e-193 680.6 526 64.3
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.5e-190 668.3 443 72.0
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 5.1e-188 661.8 622 54.8
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 7.9e-181 637.9 587 57.8
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 3.3e-179 632.5 615 54.1
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 2.1e-173 613.2 589 52.3
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 6.7e-172 608.2 435 70.8
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.5e-163 578.2 618 51.0
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 5.4e-161 572.0 509 59.1
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 3.6e-157 559.3 409 68.5
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.1e-153 547.7 819 43.5
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.0e-151 541.2 400 69.0
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.4e-148 530.8 604 46.7
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 3.2e-145 519.6 620 44.7
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.5e-142 510.0 380 67.6
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 4.1e-121 439.5 317 71.0
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.1e-118 431.4 345 64.6
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.6e-110 402.5 286 69.9
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 3.5e-104 383.3 286 66.8
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.3e-100 369.4 288 65.3
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.6e-99 367.1 600 38.5
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.6e-99 365.5 457 44.9
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 9.9e-99 365.2 267 68.9
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 3.8e-98 363.2 276 66.3
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.5e-89 332.8 307 57.7
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.9e-80 302.4 257 59.9
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.3e-77 295.0 261 55.2
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.5e-74 282.7 200 69.0
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.4e-71 275.0 171 79.5
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-68 265.4 203 61.6
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.3e-68 263.1 187 69.0
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 9.1e-68 262.3 190 71.1
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.7e-64 250.8 186 66.1
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.4e-63 248.4 204 58.8
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 7.4e-62 242.7 204 57.8
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.2e-61 241.1 163 71.2
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 1.8e-60 238.0 167 70.1
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 3.1e-60 237.3 164 70.1
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 7.5e-54 216.1 130 82.3
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 7.5e-54 216.1 142 69.0
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.2e-53 214.5 264 47.7
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 4.1e-52 210.3 474 34.0
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 4.8e-45 186.8 116 71.6
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.8e-45 186.8 120 70.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.1e-44 185.7 120 63.3
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.4e-44 185.3 132 71.2
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 1.8e-44 184.9 120 64.2
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 1.7e-42 178.3 145 66.2
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 6.6e-42 176.4 120 62.5
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 1.5e-41 175.3 120 61.7
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.8e-39 166.4 183 49.2
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 3.8e-34 150.6 169 53.3
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.1e-33 149.1 224 43.8
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 3.1e-31 141.0 85 76.5
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 1.0e-26 125.9 174 46.6
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.9e-25 121.7 75 72.0
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 6.8e-23 113.2 66 78.8
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 1.3e-21 109.0 71 71.8
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 1.1e-20 105.9 72 66.7
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.4e-20 104.8 137 42.3
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 2.7e-19 101.3 136 41.9
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 3.5e-19 100.9 60 75.0
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 1.3e-13 82.4 192 32.8
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 7.8e-11 73.2 80 42.5
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 8.1e-08 63.2 57 59.6
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.8e-07 62.0 32 84.4
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 8.9e-07 59.7 44 63.6
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 8.9e-07 59.7 44 63.6
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 2.0e-06 58.5 57 54.4
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 2.0e-06 58.5 57 54.4
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 2.0e-06 58.5 57 54.4
A05p14630 Brassica napus HOM05D015232 ORTHO05D015515 2.6e-06 58.2 51 54.9


User provided reference genes

Program Settings