Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 0.0e+00 1441.0 733 100.0
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 0.0e+00 1327.0 704 96.3
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 0.0e+00 1176.0 700 85.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 0.0e+00 1095.1 735 76.9
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 9.4e-301 1036.6 697 76.5
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 4.1e-296 1021.1 697 73.9
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 2.3e-291 1005.4 704 72.6
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 5.1e-291 1004.2 698 72.8
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.0e-290 1002.3 698 72.6
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 5.7e-290 1000.7 698 73.9
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.7e-289 999.2 697 72.7
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.3e-288 994.2 698 72.6
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.0e-287 992.3 698 73.4
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 2.0e-287 992.3 697 72.3
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.7e-286 989.2 697 72.5
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.8e-286 988.0 706 72.7
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 9.4e-285 983.4 698 72.5
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 9.4e-285 983.4 698 72.8
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 4.7e-284 981.1 711 70.5
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 5.2e-283 977.6 699 71.5
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.7e-281 971.5 699 72.4
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.1e-280 969.9 704 69.7
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 2.4e-280 968.8 704 70.2
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.4e-280 968.8 704 69.7
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 3.1e-280 968.4 697 70.2
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 7.0e-280 967.2 698 72.5
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 7.0e-280 967.2 706 69.7
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.0e-279 965.7 698 70.9
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 3.5e-279 964.9 701 70.9
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 5.9e-279 964.1 701 71.3
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.7e-278 962.6 699 70.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.7e-278 962.6 700 70.4
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 2.9e-278 961.8 698 70.8
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 3.8e-278 961.4 698 69.9
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 1.9e-277 959.1 700 69.6
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 1.9e-277 959.1 697 69.7
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 4.2e-277 958.0 719 70.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 2.1e-276 955.7 702 71.1
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 4.7e-276 954.5 698 70.2
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.4e-275 953.0 698 69.5
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 5.2e-275 951.0 697 70.4
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 2.6e-274 948.7 701 70.2
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.6e-274 948.7 724 68.4
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.4e-274 948.3 698 69.2
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 7.5e-274 947.2 707 69.6
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 1.7e-273 946.0 701 69.9
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 2.2e-273 945.7 701 70.5
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 6.3e-273 944.1 711 68.4
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 4.1e-272 941.4 702 67.9
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.4e-272 941.0 700 70.3
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 9.1e-272 940.3 699 70.7
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 1.6e-271 939.5 702 68.9
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.5e-271 938.3 737 65.5
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.7e-270 936.0 700 69.3
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 2.9e-270 935.3 699 69.5
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 3.8e-270 934.9 699 69.7
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.1e-269 933.3 698 67.8
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.1e-269 933.3 698 68.5
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 1.5e-269 932.9 701 69.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.2e-269 931.8 690 68.6
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 3.2e-269 931.8 742 65.9
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 5.5e-269 931.0 667 72.6
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 7.2e-269 930.6 709 68.3
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 7.2e-269 930.6 705 69.5
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 9.4e-269 930.2 701 68.6
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.7e-268 927.9 702 68.8
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.0e-267 926.8 700 68.9
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 2.3e-267 925.6 700 69.0
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 4.0e-267 924.9 701 67.9
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 8.8e-267 923.7 707 67.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.2e-265 919.1 707 66.8
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 3.7e-265 918.3 702 68.9
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 1.4e-264 916.4 700 68.6
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 5.4e-264 914.4 700 68.4
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 9.2e-264 913.7 712 68.1
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.2e-263 913.3 702 66.5
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.9e-263 911.0 661 71.4
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.8e-262 908.3 701 67.9
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 8.6e-262 907.1 701 68.2
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 8.6e-262 907.1 697 66.1
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 5.6e-261 904.4 701 67.6
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.1e-260 902.5 699 65.8
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 3.4e-258 895.2 699 66.8
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.6e-255 886.3 702 66.7
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.6e-255 886.3 608 73.5
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 8.0e-252 874.0 702 66.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 3.0e-246 855.5 659 66.9
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.7e-241 839.7 609 71.3
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.1e-240 837.0 699 63.1
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 2.8e-236 822.4 783 56.8
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 6.4e-233 811.2 697 62.8
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.1e-232 810.4 608 68.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 6.4e-217 758.1 707 56.4
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 8.4e-217 757.7 552 71.6
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.3e-213 745.7 555 70.1
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 2.1e-212 743.0 602 63.8
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.0e-210 736.5 703 55.9
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.1e-203 714.1 684 57.5
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 7.6e-202 708.0 489 72.0
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 3.8e-193 679.1 454 76.4
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.9e-192 676.8 516 68.8
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.8e-171 607.1 690 50.6
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.0e-166 589.7 445 68.1
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 5.3e-163 578.9 467 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 9.1e-163 578.2 570 53.9
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 5.7e-157 558.9 432 66.9
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 8.6e-153 545.0 433 65.6
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 9.8e-141 505.0 411 65.5
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.8e-135 486.9 427 59.3
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 4.7e-135 486.1 425 58.6
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.9e-132 476.9 397 61.7
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.1e-123 448.4 362 65.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.4e-123 446.0 362 64.9
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.9e-115 421.0 505 49.9
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 5.5e-91 339.7 221 74.7
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 2.1e-90 337.8 264 66.7
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 4.2e-75 287.0 174 79.9
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 5.9e-69 266.5 230 61.7
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 3.8e-68 263.8 160 80.6
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.8e-54 218.4 301 43.5
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.0e-53 214.9 142 73.9
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 3.2e-51 207.6 155 67.1
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 2.4e-46 191.4 126 73.0
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 9.1e-46 189.5 132 72.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 5.9e-45 186.8 313 44.1
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 8.5e-44 183.0 101 84.2
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.0e-37 161.8 158 55.1
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 5.0e-36 157.1 290 36.9
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.9e-35 155.2 141 57.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 5.5e-35 153.7 93 80.6
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.4e-30 139.0 89 76.4
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 4.1e-30 137.5 135 56.3
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.1e-27 129.4 81 75.3
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.3e-25 121.7 84 73.8
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 4.4e-24 117.5 117 55.6
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 9.8e-24 116.3 80 70.0
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 9.2e-22 109.8 132 47.0
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 8.6e-20 103.2 71 70.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 8.9e-17 93.2 58 72.4
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 1.5e-16 92.4 145 35.9
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 3.4e-16 91.3 53 84.9
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 9.8e-16 89.7 58 69.0
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.3e-15 89.4 139 42.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.3e-15 89.4 57 77.2
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 1.9e-14 85.5 52 76.9
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 3.5e-13 81.3 52 73.1
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 6.6e-12 77.0 79 50.6
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.8e-10 71.6 44 79.5
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 8.9e-09 66.6 36 91.7
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.2e-08 66.2 73 49.3
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.1e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.1e-06 57.8 29 96.6


User provided reference genes

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