Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 1.2e-252 875.9 433 100.0
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 7.3e-245 850.1 431 96.5
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 4.2e-200 701.4 495 72.9
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 3.2e-184 648.7 446 74.2
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 4.4e-173 611.7 428 69.2
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 8.6e-169 597.4 439 70.6
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 5.0e-161 571.6 452 64.4
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 3.6e-159 565.5 450 64.4
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 3.6e-159 565.5 450 64.4
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 3.4e-157 558.9 450 63.1
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 3.4e-157 558.9 426 66.7
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 9.8e-157 557.4 450 63.8
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 1.7e-156 556.6 451 61.9
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 1.7e-156 556.6 408 64.0
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 3.7e-156 555.4 451 63.2
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 8.3e-156 554.3 449 61.5
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 1.4e-155 553.5 449 62.6
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 5.4e-155 551.6 422 64.7
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 7.0e-155 551.2 454 61.2
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 1.6e-154 550.1 449 62.1
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 2.7e-154 549.3 450 62.2
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 1.0e-153 547.4 427 65.3
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 1.0e-153 547.4 449 62.1
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 1.0e-153 547.4 455 61.3
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 1.0e-153 547.4 449 62.1
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.3e-153 547.0 472 59.5
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 5.1e-153 545.0 450 61.8
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 5.1e-153 545.0 450 61.6
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 8.6e-153 544.3 449 61.9
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 4.3e-152 542.0 461 61.2
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 1.6e-151 540.0 449 61.5
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 2.1e-151 539.7 450 61.6
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 3.6e-151 538.9 424 63.7
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 3.6e-151 538.9 447 62.0
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 4.7e-151 538.5 451 60.8
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 6.2e-151 538.1 449 61.5
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 1.8e-150 536.6 438 60.5
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 3.1e-150 535.8 453 60.0
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 4.0e-150 535.4 416 64.2
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 1.2e-149 533.9 458 61.1
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 2.0e-149 533.1 450 59.6
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.4e-149 532.3 449 59.2
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 4.4e-149 531.9 446 59.6
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 5.8e-149 531.6 414 63.0
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 7.5e-149 531.2 449 59.2
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 7.5e-149 531.2 449 59.2
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 3.2e-147 525.8 448 59.2
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 4.1e-147 525.4 423 62.4
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 4.1e-147 525.4 427 61.8
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 4.1e-147 525.4 434 61.1
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 7.1e-147 524.6 450 59.1
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 1.6e-146 523.5 452 58.6
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 1.6e-146 523.5 427 62.1
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 1.6e-146 523.5 427 62.1
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 1.6e-146 523.5 427 62.1
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.6e-146 523.5 392 64.3
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 1.6e-146 523.5 455 58.9
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 4.6e-146 521.9 424 61.8
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 6.0e-146 521.5 454 59.5
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 1.0e-145 520.8 449 58.8
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 1.0e-145 520.8 458 58.1
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 1.3e-145 520.4 427 61.6
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 1.3e-145 520.4 418 61.5
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 1.7e-145 520.0 439 59.9
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 2.3e-145 519.6 456 58.6
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 3.9e-145 518.8 450 60.2
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 5.1e-145 518.5 375 67.2
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 1.1e-144 517.3 429 61.5
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 1.5e-144 516.9 399 65.9
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 1.9e-144 516.5 424 61.1
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 9.5e-144 514.2 429 60.6
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 1.6e-143 513.5 373 67.0
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 1.6e-143 513.5 425 60.0
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 3.6e-143 512.3 552 51.3
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 6.2e-143 511.5 420 61.0
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 1.2e-141 507.3 417 61.9
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 6.6e-137 491.5 476 54.2
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 2.8e-135 486.1 455 55.6
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 1.1e-134 484.2 404 59.4
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 2.0e-133 479.9 452 56.9
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 9.9e-133 477.6 407 58.5
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 2.9e-132 476.1 397 56.4
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 2.4e-131 473.0 448 54.9
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 4.2e-131 472.2 390 61.8
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 4.2e-131 472.2 525 49.3
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 1.1e-126 457.6 402 58.0
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 5.6e-120 435.3 359 58.5
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 8.1e-119 431.4 357 61.9
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 2.4e-118 429.9 360 60.0
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 2.0e-117 426.8 318 64.5
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 1.0e-105 387.9 430 49.5
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 8.5e-100 368.2 397 50.4
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 6.3e-95 352.1 302 61.6
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 5.9e-93 345.5 388 46.6
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.8e-89 334.0 217 70.0
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 2.2e-87 327.0 386 49.5
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 1.8e-86 323.9 454 41.9
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.3e-84 317.8 251 62.5
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 9.4e-83 311.6 234 62.4
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.8e-78 297.4 178 76.4
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 3.2e-75 286.6 282 55.0
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 8.0e-66 255.4 214 59.3
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 8.6e-60 235.3 145 75.9
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 3.4e-56 223.4 230 55.2
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 2.7e-53 213.8 141 74.5
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 6.6e-52 209.1 143 70.6
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 2.5e-51 207.2 227 51.1
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 2.5e-51 207.2 227 51.1
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 2.5e-51 207.2 227 51.1
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 7.3e-51 205.7 250 47.2
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 4.3e-43 179.9 406 32.3
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 3.6e-42 176.8 129 63.6
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 1.0e-36 158.7 325 33.2
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.3e-36 158.3 175 53.1
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.5e-32 144.8 119 55.5
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 6.0e-29 132.9 194 38.1
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 1.0e-28 132.1 171 42.1
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 1.0e-28 132.1 171 42.1
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 3.3e-27 127.1 135 54.1
FAN13G0557 Fragaria x ananassa HOM05D005983 ORTHO05D007438 7.3e-27 125.9 95 63.2
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 2.6e-24 117.5 114 50.9
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 1.1e-22 112.1 186 36.6
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 7.1e-22 109.4 271 29.2
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 8.1e-18 95.9 258 27.9
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 9.0e-17 92.4 99 46.5
RcHm_v2.0_Chr7g0203671 Rosa chinensis HOM05D005983 ORTHO05D007438 7.6e-16 89.4 88 53.4
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 5.4e-14 83.2 274 26.6
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 1.3e-12 78.6 277 28.5
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 6.6e-12 76.3 277 26.4
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.5e-11 75.1 277 26.0
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 1.5e-11 75.1 277 26.7
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 1.5e-11 75.1 267 27.3
Sabra03G0035800 Salix brachista HOM05D003620 ORTHO05D004261 1.5e-11 75.1 276 26.1
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 2.5e-11 74.3 276 26.4
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 4.3e-11 73.6 266 27.1
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 4.3e-11 73.6 72 50.0
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 5.6e-11 73.2 277 28.2
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 5.6e-11 73.2 277 28.2
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 5.6e-11 73.2 276 26.4
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 7.3e-11 72.8 276 25.4
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 1.3e-10 72.0 277 27.4
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 1.3e-10 72.0 277 27.4
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 1.3e-10 72.0 277 27.4
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 1.3e-10 72.0 277 27.8
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 1.3e-10 72.0 209 27.8
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 1.6e-10 71.6 267 25.1
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 1.6e-10 71.6 276 25.4
Cc02_g21940 Coffea canephora HOM05D003620 ORTHO05D004261 2.1e-10 71.2 274 26.6
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 2.1e-10 71.2 276 27.2
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.1e-10 71.2 276 27.5
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.1e-10 71.2 276 27.2
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.8e-10 70.9 276 27.2
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 2.8e-10 70.9 209 27.3
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 4.8e-10 70.1 277 26.7
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 6.2e-10 69.7 276 27.2
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 6.2e-10 69.7 267 27.0
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 8.1e-10 69.3 267 25.8
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 1.1e-09 68.9 209 25.8
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.1e-09 68.9 276 25.7
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 1.4e-09 68.6 276 26.8
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 5.3e-09 66.6 209 25.4
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 9.0e-09 65.9 209 26.8
Migut.B00643 Erythranthe guttata HOM05D003620 ORTHO05D004261 1.2e-08 65.5 208 28.4
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 1.2e-08 65.5 209 28.7
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.2e-08 65.5 209 25.8
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 1.2e-08 65.5 209 25.8
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 1.2e-08 65.5 209 25.8
GSVIVG01029732001 Vitis vinifera HOM05D003620 ORTHO05D004261 1.2e-08 65.5 208 26.9
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 1.5e-08 65.1 209 29.2
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 4.5e-08 63.5 210 26.7
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 5.8e-08 63.2 209 24.9
CBR_g4358 Chara braunii HOM05D003620 ORTHO05D004261 7.6e-08 62.8 185 25.4
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 1.3e-07 62.0 210 26.2
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 1.3e-07 62.0 210 26.2
SMO244G0007 Selaginella moellendorffii HOM05D003620 ORTHO05D004261 4.9e-07 60.1 213 26.8
Cre02.g119600 Chlamydomonas reinhardtii HOM05D003620 ORTHO05D004261 7.1e-06 56.2 202 26.7
Aa31LG3G13090 Aethionema arabicum HOM05D003620 ORTHO05D004261 9.3e-06 55.8 135 33.3


User provided reference genes

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