Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.5e-83 312.8 155 100.0
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.7e-82 309.3 155 98.1
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 6.8e-76 287.3 155 91.0
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.8e-69 265.4 155 82.6
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 1.4e-68 263.1 155 78.7
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 77.4
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 8.9e-68 260.4 214 65.0
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 77.4
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 74.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 4.9e-66 254.6 155 76.8
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 8.3e-66 253.8 155 76.1
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 76.8
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 76.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 75.5
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.4e-65 252.3 155 76.8
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 3.2e-65 251.9 155 75.5
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 74.2
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 4.1e-65 251.5 155 74.2
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 74.8
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 7.0e-65 250.8 155 75.5
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 74.2
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 74.8
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 2.7e-64 248.8 154 75.3
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 3.5e-64 248.4 155 72.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 72.9
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 72.3
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 72.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 72.9
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 3.9e-63 245.0 155 74.2
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 71.6
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 72.9
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 73.5
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 70.3
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 72.9
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 72.9
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 72.3
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 73.5
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 69.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 70.3
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 71.6
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 72.3
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 69.7
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 8.1e-61 237.3 174 65.5
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 69.0
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 69.7
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 71.0
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.5e-59 233.0 156 71.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.5e-59 233.0 156 71.2
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 69.0
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 69.0
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 4.4e-59 231.5 155 68.4
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 69.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 69.7
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 67.7
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 68.4
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.9e-58 228.8 153 69.3
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 68.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 67.1
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 69.0
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 67.1
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 67.7
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 69.0
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 67.1
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 67.1
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 1.2e-56 223.4 155 69.7
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 65.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.6e-56 223.0 155 66.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 65.2
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 66.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 3.5e-56 221.9 152 68.4
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 68.4
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 4.6e-56 221.5 155 64.5
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 66.5
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.0e-56 221.1 145 71.0
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.8e-56 220.7 155 67.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 7.8e-56 220.7 155 67.7
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.0e-55 220.3 155 69.0
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.7e-55 219.5 155 67.7
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.0e-55 218.8 155 67.1
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 65.2
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 3.9e-55 218.4 156 67.9
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-54 216.5 150 69.3
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 1.5e-54 216.5 155 66.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 3.3e-54 215.3 154 65.6
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.6e-54 214.5 144 70.1
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 7.3e-54 214.2 155 65.8
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.2e-53 213.4 152 66.4
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.2e-53 213.4 151 64.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 65.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.8e-53 212.2 156 65.4
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.7e-53 211.5 150 68.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.4e-52 209.9 152 65.1
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.4e-52 209.1 156 64.7
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 2.4e-52 209.1 145 65.5
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 2.4e-52 209.1 153 65.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 3.1e-52 208.8 156 64.7
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.1e-52 208.8 155 66.5
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.2e-51 206.8 127 74.8
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.5e-51 206.5 150 65.3
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 3.4e-51 205.3 156 64.7
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 5.8e-51 204.5 141 64.5
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 9.9e-51 203.8 156 62.8
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.3e-50 203.4 147 64.6
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 6.4e-50 201.1 147 65.3
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 9.2e-49 197.2 146 66.4
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.1e-48 196.1 156 60.9
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.3e-47 193.4 155 60.6
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.3e-47 192.6 163 61.3
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.3e-47 192.6 149 64.4
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 6.6e-47 191.0 152 59.9
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.5e-46 189.1 152 59.2
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.3e-46 188.3 188 50.5
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 7.3e-46 187.6 155 60.6
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 4.8e-45 184.9 144 59.7
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.8e-45 184.9 144 60.4
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 4.8e-45 184.9 144 60.4
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 6.2e-45 184.5 144 60.4
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 2.4e-44 182.6 153 56.9
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 5.8e-43 177.9 128 63.3
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.7e-42 176.4 114 75.4
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.9e-41 172.9 153 54.2
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.2e-40 170.2 99 81.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.3e-39 166.8 103 74.8
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 3.3e-38 162.2 144 53.5
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.8e-36 156.4 146 50.7
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 3.1e-36 155.6 109 63.3
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 4.0e-36 155.2 109 64.2
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.0e-36 155.2 104 71.2
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 5.3e-36 154.8 91 79.1
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.6e-32 143.3 109 64.2
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 7.4e-30 134.4 151 49.7
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.4e-28 130.2 130 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.8e-28 129.8 129 51.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 3.8e-26 122.1 83 69.9
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 9.6e-22 107.5 148 44.6
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.3e-21 107.1 152 40.1
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.3e-18 97.1 61 70.5
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.3e-18 97.1 61 70.5
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 8.4e-18 94.4 143 39.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.3e-15 87.0 140 34.3
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 3.9e-15 85.5 50 74.0
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.5e-14 82.8 68 58.8
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.4e-12 77.0 68 54.4
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 4.2e-09 65.5 116 32.8
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 7.2e-09 64.7 40 75.0


User provided reference genes

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