Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 4.1e-123 444.9 248 100.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.8e-121 438.3 248 96.8
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 9.4e-104 380.6 241 86.3
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 1.3e-92 343.6 241 77.2
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 9.2e-91 337.4 241 73.9
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 4.7e-87 325.1 239 70.7
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.4e-85 318.9 242 69.8
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.4e-85 318.9 241 72.2
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.3e-84 317.0 241 68.0
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.9e-84 315.8 242 71.9
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.4e-84 314.7 250 71.2
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 8.3e-84 314.3 242 71.5
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.1e-83 313.9 242 70.2
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.4e-83 313.5 240 68.3
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 242 71.1
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.2e-83 312.4 242 70.7
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 5.4e-83 311.6 241 68.9
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 7.0e-83 311.2 241 75.5
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 1.6e-82 310.1 240 67.9
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.0e-82 309.7 240 67.9
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 4.6e-82 308.5 245 68.6
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 4.6e-82 308.5 244 66.8
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 7.8e-82 307.8 239 69.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.0e-81 307.4 241 69.3
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.7e-81 306.6 241 66.8
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.9e-81 305.4 241 69.3
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 3.9e-81 305.4 239 66.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 3.9e-81 305.4 240 67.1
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 3.9e-81 305.4 241 68.9
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.9e-80 303.1 241 67.6
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.5e-80 302.8 240 68.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 3.3e-80 302.4 241 68.0
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 7.3e-80 301.2 240 67.1
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 7.3e-80 301.2 240 67.1
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.3e-80 301.2 240 66.7
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 7.3e-80 301.2 241 68.0
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 9.5e-80 300.8 239 67.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 9.5e-80 300.8 241 66.8
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.2e-79 300.4 241 67.2
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.2e-79 300.4 241 68.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.6e-79 300.1 205 74.6
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.1e-79 299.7 240 66.7
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.8e-79 299.3 240 66.7
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 3.6e-79 298.9 240 66.7
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.6e-79 298.9 241 68.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 4.7e-79 298.5 239 67.4
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 6.2e-79 298.1 239 67.4
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 8.0e-79 297.7 241 67.6
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.1e-78 297.4 245 64.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-78 297.0 240 66.2
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.8e-78 296.6 241 64.3
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.3e-78 296.2 206 74.3
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.3e-78 296.2 241 67.6
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.1e-78 295.8 241 66.8
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 4.0e-78 295.4 228 70.6
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.0e-78 295.4 242 66.9
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 5.2e-78 295.0 241 67.6
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 6.8e-78 294.7 240 67.5
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 8.9e-78 294.3 249 65.1
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.0e-77 293.1 236 66.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 3.4e-77 292.4 239 67.4
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.4e-77 292.0 206 72.8
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 5.8e-77 291.6 228 71.1
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 5.8e-77 291.6 239 66.5
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 5.8e-77 291.6 239 68.6
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.8e-77 291.6 238 68.1
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 7.5e-77 291.2 241 67.2
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 7.5e-77 291.2 241 67.2
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 7.5e-77 291.2 241 67.2
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 9.8e-77 290.8 239 66.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 9.8e-77 290.8 241 68.0
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 9.8e-77 290.8 238 68.1
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 9.8e-77 290.8 242 66.5
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 9.8e-77 290.8 242 66.5
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.3e-76 290.4 238 66.0
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 1.3e-76 290.4 243 67.1
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.7e-76 290.0 207 71.5
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.2e-76 289.7 239 67.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 2.2e-76 289.7 198 75.3
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.2e-76 289.7 239 66.1
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.7e-76 288.9 239 66.1
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 1.9e-75 286.6 241 65.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.4e-75 286.2 236 65.7
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 3.2e-75 285.8 234 67.5
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 5.4e-75 285.0 238 64.3
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.2e-74 283.9 242 64.5
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.6e-74 283.5 210 71.9
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.1e-74 283.1 242 64.9
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 3.5e-74 282.3 241 63.5
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 3.5e-74 282.3 236 64.4
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 4.6e-74 282.0 242 64.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 6.0e-74 281.6 242 64.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.0e-73 280.8 240 65.0
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.0e-73 280.8 243 65.4
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.3e-73 280.4 199 72.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.3e-73 279.6 241 62.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.0e-73 279.3 242 64.0
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 3.9e-73 278.9 201 71.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 5.1e-73 278.5 241 65.1
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 6.6e-73 278.1 241 65.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.9e-72 276.6 242 64.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 2.5e-72 276.2 206 71.8
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 4.3e-72 275.4 244 63.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 5.6e-72 275.0 242 63.2
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.6e-72 275.0 194 72.2
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 7.3e-72 274.6 241 64.3
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 7.3e-72 274.6 229 66.4
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 9.5e-72 274.2 242 64.9
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 9.5e-72 274.2 242 64.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.2e-71 273.9 204 69.1
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.6e-71 273.5 242 64.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 2.1e-71 273.1 241 61.4
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 8.1e-71 271.2 203 70.0
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.1e-70 270.8 242 64.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.1e-70 270.8 242 64.5
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.4e-70 270.4 227 63.4
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.3e-70 269.6 203 68.5
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.7e-68 263.5 242 60.7
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 4.1e-67 258.8 210 68.6
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 5.4e-67 258.5 238 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 9.5e-64 247.7 229 60.7
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.8e-63 246.1 182 67.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 1.4e-62 243.8 178 68.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 1.4e-62 243.8 227 58.6
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.2e-59 232.6 229 56.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 3.1e-54 216.1 155 71.0
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 6.6e-49 198.4 214 55.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.3e-48 195.7 243 47.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 1.6e-47 193.7 191 55.5
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-44 183.7 132 70.5
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 6.4e-44 181.8 170 61.8
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.1e-42 176.8 110 76.4
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 7.9e-34 148.3 102 70.6
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 6.7e-33 145.2 176 46.0
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 6.7e-33 145.2 241 43.6
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 9.0e-30 134.8 173 43.9
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 9.3e-27 124.8 86 69.8
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.1e-25 119.0 189 38.6
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 3.4e-21 106.3 129 47.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.5e-16 90.9 189 31.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 1.8e-14 84.0 53 75.5
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 9.1e-14 81.6 90 58.9
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 7.7e-13 78.6 89 52.8
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.2e-10 71.2 210 28.1
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.7e-08 62.4 63 55.6
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 4.1e-06 56.2 55 58.2


User provided reference genes

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