Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.9e-248 862.1 448 100.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.6e-237 825.1 448 96.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.6e-237 825.1 448 96.2
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.0e-196 688.0 465 80.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 8.6e-172 607.4 460 71.7
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 3.3e-171 605.5 455 72.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.2e-170 603.6 462 72.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.6e-170 603.2 464 71.3
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.6e-170 603.2 456 71.5
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.6e-170 603.2 452 71.5
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.6e-170 602.1 455 71.6
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.6e-170 602.1 460 71.5
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 8.0e-170 600.9 454 71.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-169 600.1 464 71.8
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.3e-169 599.4 456 71.5
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.3e-169 599.4 456 71.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 4.0e-169 598.6 464 70.9
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 4.0e-169 598.6 459 71.9
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.0e-168 596.3 453 71.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.6e-168 595.9 452 71.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.4e-168 595.5 467 69.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 5.8e-168 594.7 463 69.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.7e-167 593.2 459 69.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.4e-166 589.3 399 76.4
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.4e-166 589.3 457 71.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.2e-166 589.0 461 69.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 7.0e-166 587.8 457 70.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.2e-165 587.0 380 78.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.7e-165 585.9 453 70.6
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.7e-165 585.9 455 69.9
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 3.5e-165 585.5 457 69.4
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 3.5e-165 585.5 390 77.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 7.8e-165 584.3 461 67.2
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 7.8e-165 584.3 457 69.6
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 5.0e-164 581.6 455 69.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.9e-163 579.7 458 70.3
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 4.3e-163 578.6 455 68.8
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 4.3e-163 578.6 458 69.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 5.6e-163 578.2 468 69.2
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 5.6e-163 578.2 367 80.7
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 7.3e-163 577.8 380 78.4
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.2e-162 577.0 432 72.0
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.6e-162 576.6 460 68.5
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.6e-162 576.6 465 67.7
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.6e-162 576.6 396 75.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.8e-162 575.9 450 69.6
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.8e-162 575.9 446 70.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.7e-162 575.1 463 70.2
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 6.2e-162 574.7 450 69.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 8.0e-162 574.3 449 69.9
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.8e-161 573.2 464 69.4
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 4.0e-161 572.0 450 67.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.8e-161 571.2 450 68.4
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 4.4e-160 568.5 458 66.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 7.5e-160 567.8 382 76.7
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.2e-159 566.2 390 73.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.7e-159 565.5 434 71.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.4e-159 564.7 464 66.8
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-158 563.9 467 66.0
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.4e-158 562.8 458 67.0
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.4e-158 562.8 461 68.3
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.1e-158 562.0 449 68.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.0e-158 561.2 451 67.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 7.0e-158 561.2 443 69.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.6e-157 560.1 457 67.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.6e-157 560.1 461 66.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.1e-157 559.7 452 67.3
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.5e-157 558.9 460 66.3
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.0e-156 557.4 454 67.2
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.3e-156 557.0 380 75.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 3.0e-156 555.8 456 67.3
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.9e-156 555.4 461 66.4
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 3.9e-156 555.4 455 67.3
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 5.1e-156 555.1 380 75.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.6e-156 554.7 460 64.8
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.1e-155 553.9 380 75.8
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.3e-155 552.4 457 66.1
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.6e-155 551.6 380 74.7
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 7.3e-155 551.2 380 75.0
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-154 550.4 380 75.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.8e-154 549.3 461 65.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.6e-154 548.9 380 75.0
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.6e-154 548.9 380 75.0
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.6e-154 548.9 380 75.0
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 3.6e-154 548.9 379 76.3
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-153 547.4 452 65.7
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 8.9e-153 544.3 439 66.7
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-152 543.5 380 73.9
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.5e-152 543.5 379 75.5
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 5.8e-152 541.6 448 65.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.7e-151 540.0 346 78.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.7e-151 538.9 448 65.2
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.4e-150 537.0 367 75.5
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.0e-149 531.6 464 64.2
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.0e-149 531.6 464 64.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.3e-148 530.4 460 65.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-147 526.6 369 72.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 6.4e-143 511.5 461 61.6
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 2.3e-140 503.1 405 67.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.3e-135 487.3 380 68.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.3e-134 481.1 453 60.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.5e-131 473.8 313 76.7
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 2.4e-126 456.4 316 72.8
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.1e-123 447.6 312 75.3
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.3e-123 445.7 295 78.3
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.5e-120 437.2 453 55.4
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.8e-119 432.6 373 61.7
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 4.9e-119 432.2 375 61.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.4e-118 430.6 371 61.7
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.3e-115 419.5 287 74.9
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.1e-114 416.8 370 59.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 4.0e-113 412.5 372 58.9
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-111 407.5 285 71.9
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.2e-111 406.8 309 68.0
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.9e-111 405.6 429 52.2
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.4e-105 386.7 373 58.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.2e-101 374.4 372 56.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.8e-100 370.5 286 68.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.0e-96 357.1 325 59.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.4e-96 356.3 373 55.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.7e-95 354.0 367 52.3
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.5e-94 350.1 402 51.5
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 5.5e-94 349.0 374 52.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.1e-89 334.7 372 52.4
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.6e-83 313.5 377 47.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.6e-80 304.3 248 66.5
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 7.5e-67 258.8 337 48.4
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.1e-52 210.3 350 41.1
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.0e-52 209.9 150 71.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 3.4e-43 180.3 227 49.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.1e-39 166.4 108 73.1
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.1e-36 157.1 169 51.5
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.3e-34 149.1 90 78.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-33 147.1 107 67.3
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 4.1e-33 146.7 120 61.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.3e-30 136.7 170 48.2
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.7e-24 117.5 73 82.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.2e-21 106.3 87 70.1
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 7.9e-16 89.4 102 49.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 4.3e-14 83.6 75 54.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.8e-10 70.5 45 77.8
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 4.6e-08 63.5 170 34.1


User provided reference genes

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