Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.7e-107 392.9 230 100.0
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.2e-92 343.6 232 86.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.4e-90 336.7 232 83.2
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-88 330.5 234 82.5
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-88 330.5 234 82.5
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.0e-88 330.5 249 77.5
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.8e-88 329.7 233 82.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 5.2e-88 328.2 232 82.8
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.2e-88 328.2 234 82.5
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 8.8e-88 327.4 234 85.9
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.0e-87 326.2 232 84.5
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.6e-87 325.9 233 82.0
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 3.3e-87 325.5 233 81.1
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.3e-86 323.6 233 80.3
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.2e-86 322.8 233 79.8
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.7e-86 322.0 238 80.7
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 6.3e-86 321.2 234 78.6
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.1e-85 320.5 234 78.2
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.8e-85 319.7 233 79.4
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.4e-85 319.3 234 83.3
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.1e-85 318.5 235 80.4
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 9.1e-85 317.4 236 79.2
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-84 316.6 232 77.6
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.6e-84 315.8 236 82.6
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 4.5e-84 315.1 232 77.2
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 5.9e-84 314.7 233 81.1
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 7.7e-84 314.3 233 81.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 7.7e-84 314.3 234 81.2
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 7.7e-84 314.3 232 77.6
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.0e-83 313.9 235 81.7
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.0e-83 313.9 235 81.7
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.3e-83 313.5 236 81.8
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.7e-83 313.2 246 76.8
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.2e-83 312.8 233 80.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.2e-83 312.8 232 78.9
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 2.9e-83 312.4 233 78.1
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 3.8e-83 312.0 235 80.9
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.0e-83 311.6 233 77.7
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.0e-83 311.6 234 80.8
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 6.5e-83 311.2 234 75.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 6.5e-83 311.2 232 80.2
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 8.5e-83 310.8 233 80.7
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 8.5e-83 310.8 232 79.7
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 8.5e-83 310.8 234 80.3
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.5e-82 310.1 234 77.4
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.5e-82 310.1 235 79.6
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.9e-82 309.7 233 80.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.9e-82 309.7 234 79.5
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.5e-82 309.3 234 79.9
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.5e-82 308.1 236 80.9
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 7.2e-82 307.8 232 77.6
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 9.4e-82 307.4 234 76.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 9.4e-82 307.4 235 76.6
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 9.4e-82 307.4 234 81.2
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-81 307.0 231 80.5
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.1e-81 306.2 235 76.2
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.7e-81 305.8 234 76.5
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 4.7e-81 305.1 232 74.1
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 6.1e-81 304.7 233 77.7
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 6.1e-81 304.7 231 79.7
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 8.0e-81 304.3 234 76.9
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.0e-80 303.9 234 79.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.0e-80 303.9 234 75.6
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.0e-80 303.9 233 79.4
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.4e-80 303.5 235 76.2
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 1.8e-80 303.1 232 76.7
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 5.2e-80 301.6 235 75.3
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 75.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 74.5
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 75.3
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 75.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 74.5
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.3e-79 298.9 235 77.0
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.3e-79 298.9 232 76.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.4e-79 298.5 235 74.5
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.4e-79 298.5 236 75.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.4e-79 298.5 236 75.4
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 7.5e-79 297.7 233 74.2
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.5e-79 297.7 232 71.6
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 7.5e-79 297.7 234 78.6
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.5e-79 297.7 238 77.7
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.3e-78 297.0 232 77.2
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 1.7e-78 296.6 233 75.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.2e-78 296.2 233 76.0
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 2.8e-78 295.8 231 77.1
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.7e-78 295.4 234 77.4
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 8.2e-78 294.3 235 74.5
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 8.2e-78 294.3 235 74.5
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 8.2e-78 294.3 235 74.5
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.1e-77 293.9 234 73.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.4e-77 292.7 232 71.1
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 5.3e-77 291.6 233 75.1
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 75.9
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.0e-76 289.7 231 75.8
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.0e-76 289.7 234 77.4
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.7e-76 289.3 233 73.4
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.5e-76 288.9 234 75.6
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 4.5e-76 288.5 233 79.4
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.0e-75 287.3 232 73.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 6.5e-75 284.6 234 73.5
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 8.5e-75 284.3 233 76.4
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 8.5e-75 284.3 235 72.8
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 4.2e-74 282.0 234 74.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.2e-73 280.4 240 77.1
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 2.1e-73 279.6 230 71.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 2.7e-73 279.3 236 75.4
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 3.6e-73 278.9 235 76.2
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.7e-73 278.5 287 59.2
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 6.1e-73 278.1 233 73.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 8.0e-73 277.7 219 80.8
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.3e-72 276.2 232 68.5
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 4.0e-72 275.4 254 63.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 5.2e-72 275.0 234 73.1
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 8.8e-72 274.2 235 66.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.2e-71 273.9 232 68.1
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.4e-71 272.3 241 66.0
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.7e-71 271.6 235 66.8
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 3.7e-70 268.9 228 73.7
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.4e-69 266.9 233 73.0
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 3.1e-69 265.8 234 69.7
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.6e-68 263.5 234 72.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-68 261.9 232 66.4
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 7.7e-68 261.2 232 69.0
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.0e-67 260.8 236 69.1
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.0e-67 260.8 234 72.2
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.3e-67 260.4 232 68.5
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.7e-67 260.0 237 70.0
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.7e-67 260.0 237 70.0
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.9e-67 259.2 232 74.1
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-66 256.9 232 74.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 1.9e-66 256.5 232 72.8
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.9e-66 256.5 232 73.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 5.5e-66 255.0 231 72.3
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 5.5e-66 255.0 273 61.9
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-65 253.4 232 72.8
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 2.2e-62 243.0 232 70.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-60 237.3 236 66.9
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 6.8e-56 221.5 191 75.4
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.3e-54 217.2 241 64.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.7e-54 216.9 189 73.5
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.9e-53 213.4 158 81.0
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.5e-50 203.8 242 59.1
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.3e-48 196.4 190 70.5
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 5.2e-48 195.3 157 77.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-47 193.7 233 58.4
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.7e-46 190.3 255 51.4
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.2e-44 184.1 117 80.3
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 4.6e-44 182.2 241 55.2
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.0e-44 181.8 117 80.3
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.1e-42 177.6 117 78.6
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.1e-40 169.5 116 77.6
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.0e-40 169.1 116 77.6
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.8e-39 165.2 116 75.9
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 2.4e-37 159.8 117 76.9
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.2e-37 157.9 158 75.3
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.7e-35 153.7 97 84.5
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 3.3e-34 149.4 93 84.9
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.8e-32 143.7 98 76.5
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 4.0e-32 142.5 135 68.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 8.4e-30 134.8 187 56.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 7.8e-28 128.3 81 81.5
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 5.1e-27 125.6 231 44.6
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 7.3e-26 121.7 66 93.9
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 7.3e-26 121.7 90 71.1
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.6e-25 120.6 76 80.3
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.5e-23 114.0 97 64.9
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 4.4e-23 112.5 72 79.2
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 9.9e-23 111.3 96 65.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 2.4e-21 106.7 227 41.0
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.6e-20 102.4 181 46.4
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 9.0e-16 88.2 44 93.2
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 3.4e-15 86.3 56 75.0
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 7.1e-13 78.6 71 62.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.7e-11 72.0 83 55.4
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 2.8e-09 66.6 126 35.7
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.3e-08 62.4 83 48.2


User provided reference genes

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