Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1145G023 Amborella trichopoda HOM05D001092 ORTHO05D000923 3.9e-99 364.8 179 100.0
ATR1145G101 Amborella trichopoda HOM05D001092 ORTHO05D000923 4.9e-86 321.2 158 98.7
GSVIVG01017643001 Vitis vinifera HOM05D001092 ORTHO05D000923 3.8e-54 215.3 157 64.3
Dinv29544 Davidia involucrata HOM05D001092 ORTHO05D000923 8.4e-54 214.2 158 65.2
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.1e-53 213.8 154 65.6
TAR362G0616 Trochodendron aralioides HOM05D001092 ORTHO05D000923 1.4e-53 213.4 157 66.2
Rhsim04G0245300 Rhododendron simsii HOM05D001092 ORTHO05D000923 2.5e-53 212.6 154 65.6
Actinidia18491 Actinidia chinensis HOM05D001092 ORTHO05D000923 5.5e-53 211.5 159 62.9
MBI07_g08155_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.9e-52 207.6 158 64.6
MD16G1145600 Malus domestica HOM05D001092 ORTHO05D000923 1.0e-51 207.2 158 63.3
MD16G1145300 Malus domestica HOM05D001092 ORTHO05D000923 1.8e-51 206.5 153 64.7
Haze_00817 Corylus avellana HOM05D001092 ORTHO05D000923 2.3e-51 206.1 158 62.7
Ciclev10004114m.g Citrus clementina HOM05D001092 ORTHO05D000923 5.1e-51 204.9 157 63.1
Cpa.g.sc146.55 Carica papaya HOM05D001092 ORTHO05D000923 1.1e-50 203.8 157 63.7
QL06p013529 Quercus lobata HOM05D001092 ORTHO05D000923 1.5e-50 203.4 153 63.4
Aqoxy4G01582 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 1.9e-50 203.0 156 62.8
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 1.9e-50 203.0 158 62.0
Migut.G00017 Erythranthe guttata HOM05D001092 ORTHO05D000923 2.5e-50 202.6 158 59.5
Prupe.1G110200 Prunus persica HOM05D001092 ORTHO05D000923 2.5e-50 202.6 162 61.7
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 7.4e-50 201.1 157 58.6
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 1.3e-49 200.3 157 60.5
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 1.6e-49 199.9 162 59.3
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.6e-49 199.9 157 61.8
PSO761G0196 Papaver somniferum HOM05D001092 ORTHO05D000923 1.6e-49 199.9 159 64.2
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 2.2e-49 199.5 162 58.6
CiPaw.01G132700 Carya illinoinensis HOM05D001092 ORTHO05D000923 2.8e-49 199.1 158 60.8
PSO210G3521 Papaver somniferum HOM05D001092 ORTHO05D000923 2.8e-49 199.1 158 63.9
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 3.7e-49 198.7 157 59.2
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 3.7e-49 198.7 157 59.2
Sabra08G0076100 Salix brachista HOM05D001092 ORTHO05D000923 3.7e-49 198.7 158 60.1
Nn2g14501 Nelumbo nucifera HOM05D001092 ORTHO05D000923 4.8e-49 198.4 157 59.9
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 6.3e-49 198.0 157 59.2
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 6.3e-49 198.0 157 59.2
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 6.3e-49 198.0 158 58.2
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 1.4e-48 196.8 157 59.2
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 1.4e-48 196.8 157 59.2
Ca_21395_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 1.8e-48 196.4 158 57.6
HPP92_008101 Vanilla planifolia HOM05D001092 ORTHO05D000923 1.8e-48 196.4 158 58.9
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 2.4e-48 196.1 157 59.9
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 3.1e-48 195.7 157 58.6
BcaC07g37171 Brassica carinata HOM05D001092 ORTHO05D000923 3.1e-48 195.7 157 58.6
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 3.1e-48 195.7 157 58.6
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 3.1e-48 195.7 158 57.6
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 3.1e-48 195.7 157 58.0
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 5.3e-48 194.9 156 61.5
ClCG05G006770 Citrullus lanatus HOM05D001092 ORTHO05D000923 6.9e-48 194.5 158 58.2
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 6.9e-48 194.5 157 61.1
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 6.9e-48 194.5 157 61.1
Lj4g0014122 Lotus japonicus HOM05D001092 ORTHO05D000923 6.9e-48 194.5 153 59.5
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 6.9e-48 194.5 158 56.3
Lj6A698G103 Lonicera japonica HOM05D001092 ORTHO05D000923 9.0e-48 194.1 156 57.7
BcaB07g33792 Brassica carinata HOM05D001092 ORTHO05D000923 1.2e-47 193.7 157 58.0
Gohir.A02G056802 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.2e-47 193.7 161 58.4
Gohir.D02G062000 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.2e-47 193.7 157 59.2
Gorai.005G069700 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.2e-47 193.7 157 59.2
Medtr4g123110 Medicago truncatula HOM05D001092 ORTHO05D000923 1.2e-47 193.7 156 57.1
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 1.5e-47 193.4 158 58.9
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 1.5e-47 193.4 158 57.6
MSTRG.3839 Avicennia marina HOM05D001092 ORTHO05D000923 2.0e-47 193.0 158 56.3
COL.COLO4_34531 Corchorus olitorius HOM05D001092 ORTHO05D000923 2.0e-47 193.0 157 59.2
TWI73G1237 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 2.0e-47 193.0 157 60.5
Lalb_Chr13g0298831 Lupinus albus HOM05D001092 ORTHO05D000923 3.4e-47 192.2 139 64.7
MD13G1146800 Malus domestica HOM05D001092 ORTHO05D000923 4.5e-47 191.8 158 59.5
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 5.9e-47 191.4 155 57.4
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 5.9e-47 191.4 156 57.7
SGA_v2.0_scaffold157G37366 Striga asiatica HOM05D001092 ORTHO05D000923 5.9e-47 191.4 157 58.0
DCAR_023379 Daucus carota HOM05D001092 ORTHO05D000923 1.0e-46 190.7 156 56.4
Gohir.A10G175901 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.0e-46 190.7 157 59.9
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 1.0e-46 190.7 157 59.9
Aa31LG10G5640 Aethionema arabicum HOM05D001092 ORTHO05D000923 1.7e-46 189.9 162 56.2
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 6.5e-46 188.0 158 56.3
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 1.1e-45 187.2 158 55.7
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 1.9e-45 186.4 158 55.7
Ah.03g145680 Amaranthus hybridus HOM05D001092 ORTHO05D000923 2.5e-45 186.0 158 55.7
CDE02G0669 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 3.2e-45 185.7 165 57.6
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 3.2e-45 185.7 158 56.3
RcHm_v2.0_Chr4g0426501 Rosa chinensis HOM05D001092 ORTHO05D000923 4.2e-45 185.3 146 61.6
FvH4_4g20980 Fragaria vesca HOM05D001092 ORTHO05D000923 5.5e-45 184.9 148 60.1
Lalb_Chr12g0200731 Lupinus albus HOM05D001092 ORTHO05D000923 5.5e-45 184.9 147 59.9
SalBow8G3461 Salvia bowleyana HOM05D001092 ORTHO05D000923 5.5e-45 184.9 140 61.4
Atru.chr4.3074 Acer truncatum HOM05D001092 ORTHO05D000923 9.4e-45 184.1 143 62.9
ECA247G3249 Erigeron canadensis HOM05D001092 ORTHO05D000923 9.4e-45 184.1 158 56.3
PGR004G1484 Punica granatum HOM05D001092 ORTHO05D000923 2.1e-44 183.0 159 57.9
Os02g0470600 Oryza sativa ssp. japonica HOM05D001092 ORTHO05D000923 2.7e-44 182.6 138 62.3
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 3.6e-44 182.2 158 55.1
Glyma.07G233100 Glycine max HOM05D001092 ORTHO05D000923 3.6e-44 182.2 139 59.7
HanXRQChr01g0031031 Helianthus annuus HOM05D001092 ORTHO05D000923 4.6e-44 181.8 158 56.3
Nitab4.5_0001977g0110 Nicotiana tabacum HOM05D001092 ORTHO05D000923 7.9e-44 181.0 159 54.1
EL10Ac6g15714 Beta vulgaris HOM05D001092 ORTHO05D000923 1.4e-43 180.3 158 55.7
Lsat_1_v5_gn_1_40321 Lactuca sativa HOM05D001092 ORTHO05D000923 3.9e-43 178.7 139 59.7
Nitab4.5_0007366g0010 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.5e-42 176.8 158 53.2
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 9.7e-42 174.1 139 55.4
HanXRQChr10g0319871 Helianthus annuus HOM05D001092 ORTHO05D000923 9.7e-42 174.1 158 55.1
Phvul.003G119100 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 9.7e-42 174.1 139 56.8
Solyc09g009350.2 Solanum lycopersicum HOM05D001092 ORTHO05D000923 1.3e-41 173.7 154 55.2
Psat0s45g0120 Pisum sativum HOM05D001092 ORTHO05D000923 1.7e-41 173.3 129 61.2
Sopen09g004100 Solanum pennellii HOM05D001092 ORTHO05D000923 2.2e-41 172.9 154 55.2
FAN12G2952 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.1e-40 170.6 148 58.1
RcHm_v2.0_Chr4g0407761 Rosa chinensis HOM05D001092 ORTHO05D000923 1.8e-40 169.9 146 57.5
FAN17G2279 Fragaria x ananassa HOM05D001092 ORTHO05D000923 9.1e-40 167.5 148 56.8
Aqoxy2G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 1.3e-38 163.7 137 58.4
unitig_0.g1661 Utricularia gibba HOM05D001092 ORTHO05D000923 7.9e-36 154.5 159 48.4
SEGI_19754 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 8.8e-35 151.0 135 51.9
unitig_94.g28287 Utricularia gibba HOM05D001092 ORTHO05D000923 8.8e-35 151.0 149 49.7
vmacro07986 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 2.6e-34 149.4 112 62.5
unitig_82.g26960 Utricularia gibba HOM05D001092 ORTHO05D000923 2.8e-33 146.0 149 48.3
Pp3c9_20320 Physcomitrium patens HOM05D001092 ORTHO05D000923 2.9e-30 136.0 134 46.3
Mapoly0076s0036 Marchantia polymorpha HOM05D001092 ORTHO05D000923 3.2e-29 132.5 135 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1817 Anthoceros agrestis HOM05D001092 ORTHO05D000923 1.4e-27 127.1 135 42.2
Peaxi162Scf00290g00039 Petunia axillaris HOM05D001092 ORTHO05D000923 3.9e-27 125.6 115 54.8
SMO240G0003 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 8.8e-27 124.4 155 40.0
SMO240G0011 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 8.8e-27 124.4 155 40.0
SMO240G0049 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 8.8e-27 124.4 155 40.0
SMO240G0016 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 3.3e-26 122.5 155 39.4
SMO340G0042 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 4.4e-26 122.1 155 38.7
RcHm_v2.0_Chr4g0407721 Rosa chinensis HOM05D001092 ORTHO05D000923 1.3e-25 120.6 136 45.6
unitig_578.g15846 Utricularia gibba HOM05D001092 ORTHO05D000923 1.6e-23 113.6 130 43.8
SHI00075 Sapria himalayana HOM05D001092 ORTHO05D000923 2.5e-21 106.3 104 50.0
CBR_g4878 Chara braunii HOM05D001092 ORTHO05D000923 4.4e-18 95.5 134 35.1
Mapoly0105s0039 Marchantia polymorpha HOM05D001092 ORTHO05D000923 6.3e-17 91.7 137 31.4
AagrBONN_evm.TU.Sc2ySwM_362.876 Anthoceros agrestis HOM05D001092 ORTHO05D000923 6.5e-14 81.6 135 31.9
SEGI_38876 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 5.5e-13 78.6 148 35.1
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.0e-11 74.3 134 30.6
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 6.8e-11 71.6 134 29.9
Gohir.A03G003250 Gossypium hirsutum HOM05D001092 ORTHO05D000923 8.8e-11 71.2 134 29.9
vmacro00375 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 2.6e-10 69.7 135 28.1
Rhsim11G0008200 Rhododendron simsii HOM05D001092 ORTHO05D000923 5.7e-10 68.6 141 27.0
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.5e-10 68.2 136 29.4
Pp3c22_21110 Physcomitrium patens HOM05D001092 ORTHO05D000923 7.5e-10 68.2 131 29.8
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 9.8e-10 67.8 136 26.5
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 9.8e-10 67.8 137 30.7
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 2.2e-09 66.6 154 27.9
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 3.7e-09 65.9 139 28.1
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 4.9e-09 65.5 136 27.9
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 4.9e-09 65.5 141 28.4
Lsat_1_v5_gn_3_15901 Lactuca sativa HOM05D001092 ORTHO05D000923 6.3e-09 65.1 139 28.1
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 8.3e-09 64.7 137 27.7
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 8.3e-09 64.7 147 26.5
Peaxi162Scf00084g00119 Petunia axillaris HOM05D001092 ORTHO05D000923 1.1e-08 64.3 134 27.6
Pp3c18_1370 Physcomitrium patens HOM05D001092 ORTHO05D000923 1.1e-08 64.3 133 26.3
Pp3c18_1376 Physcomitrium patens HOM05D001092 ORTHO05D000923 1.1e-08 64.3 133 26.3
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 1.4e-08 63.9 137 28.5
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 1.8e-08 63.5 136 27.2
Ciclev10024056m.g Citrus clementina HOM05D001092 ORTHO05D000923 2.4e-08 63.2 139 25.2
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 2.4e-08 63.2 134 24.6
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 3.1e-08 62.8 139 26.6
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 3.1e-08 62.8 139 26.6
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 3.1e-08 62.8 138 24.6
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 3.1e-08 62.8 139 26.6
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 4.1e-08 62.4 135 24.4
CDE02G1948 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 4.1e-08 62.4 138 25.4
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 4.1e-08 62.4 136 25.0
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 4.1e-08 62.4 137 27.0
Solyc08g077490.2 Solanum lycopersicum HOM05D001092 ORTHO05D000923 5.4e-08 62.0 136 26.5
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 5.4e-08 62.0 136 26.5
SGA_v2.0_scaffold20G09243 Striga asiatica HOM05D001092 ORTHO05D000923 5.4e-08 62.0 138 28.3
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 7.0e-08 61.6 135 25.2
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 7.0e-08 61.6 136 27.9
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 9.1e-08 61.2 137 27.7
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 9.1e-08 61.2 134 24.6
MSTRG.1961 Avicennia marina HOM05D001092 ORTHO05D000923 2.7e-07 59.7 137 24.8
SHI00076 Sapria himalayana HOM05D001092 ORTHO05D000923 3.5e-07 59.3 45 57.8
Migut.E00809 Erythranthe guttata HOM05D001092 ORTHO05D000923 4.5e-07 58.9 139 28.1
CSS0031966 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 1.7e-06 57.0 152 24.3
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 2.3e-06 56.6 136 25.0
Lsat_1_v5_gn_3_108261 Lactuca sativa HOM05D001092 ORTHO05D000923 2.9e-06 56.2 45 57.8


User provided reference genes

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