Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 1.4e-145 519.6 265 100.0
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 5.0e-87 325.1 258 65.5
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 3.1e-84 315.8 241 67.2
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 4.0e-84 315.5 254 65.7
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 2.0e-83 313.2 217 72.8
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 3.4e-83 312.4 257 64.2
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 7.5e-83 311.2 258 64.7
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 1.3e-82 310.5 241 67.2
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 4.9e-82 308.5 257 63.8
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 2.7e-80 302.8 219 69.4
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.3e-79 300.4 261 62.8
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 3.0e-79 299.3 257 61.1
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 4.3e-78 295.4 262 61.5
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 1.6e-77 293.5 258 60.9
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.6e-77 293.5 264 61.4
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 4.7e-77 292.0 253 60.9
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 6.2e-77 291.6 217 68.7
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 6.2e-77 291.6 217 68.7
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 8.0e-77 291.2 249 61.4
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 8.0e-77 291.2 225 63.1
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 2.3e-76 289.7 230 65.7
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 3.1e-76 289.3 253 63.6
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 5.2e-76 288.5 261 60.2
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 1.5e-75 287.0 258 61.6
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 2.0e-75 286.6 242 64.0
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 3.4e-75 285.8 197 72.6
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 5.8e-75 285.0 249 59.4
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 5.8e-75 285.0 260 59.2
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 7.5e-75 284.6 220 68.2
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 7.5e-75 284.6 218 66.5
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.9e-74 282.7 255 58.8
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 3.7e-74 282.3 220 67.3
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 4.9e-74 282.0 263 59.3
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 6.4e-74 281.6 250 58.0
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 1.1e-73 280.8 234 64.5
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 1.4e-73 280.4 242 62.0
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.9e-73 280.0 214 65.9
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.9e-73 280.0 263 60.5
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 2.4e-73 279.6 261 56.7
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 3.2e-73 279.3 220 66.4
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.2e-73 279.3 264 56.1
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 3.2e-73 279.3 221 64.7
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 7.0e-73 278.1 257 57.6
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 7.0e-73 278.1 241 62.7
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 1.6e-72 276.9 219 62.6
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 1.6e-72 276.9 254 59.4
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 1.6e-72 276.9 221 65.2
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 2.1e-72 276.6 253 58.1
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.1e-72 276.6 238 60.5
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.7e-72 276.2 252 57.5
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 3.5e-72 275.8 219 63.9
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.5e-72 275.8 237 60.3
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.6e-72 275.4 238 63.0
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.0e-71 274.2 221 64.7
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.0e-71 274.2 250 56.8
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.0e-71 274.2 250 56.8
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.3e-71 273.9 230 60.9
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.3e-71 273.9 250 56.8
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 2.3e-71 273.1 203 70.0
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 3.0e-71 272.7 234 61.1
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 3.9e-71 272.3 256 56.2
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 3.9e-71 272.3 209 67.5
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.1e-71 271.9 237 59.5
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 6.6e-71 271.6 261 57.5
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 8.6e-71 271.2 216 63.0
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 8.6e-71 271.2 257 56.8
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.1e-70 270.8 208 64.4
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 1.1e-70 270.8 208 64.4
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.1e-70 270.8 208 64.4
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 1.1e-70 270.8 208 64.4
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.1e-70 270.8 176 75.0
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 2.5e-70 269.6 257 57.2
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 4.3e-70 268.9 256 56.6
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 4.3e-70 268.9 209 63.6
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 9.5e-70 267.7 217 63.1
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 2.1e-69 266.5 258 56.2
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 2.8e-69 266.2 255 56.5
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 4.7e-69 265.4 243 58.0
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 8.1e-69 264.6 223 60.1
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.1e-68 264.2 203 67.5
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 1.8e-68 263.5 209 63.6
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 2.3e-68 263.1 251 56.6
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 3.1e-68 262.7 257 56.8
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.6e-67 259.6 259 54.1
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 3.4e-67 259.2 258 54.3
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 4.4e-67 258.8 226 61.1
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 5.8e-67 258.5 256 56.6
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 7.5e-67 258.1 159 79.2
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.3e-66 257.3 232 57.8
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 2.2e-66 256.5 216 60.6
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 6.4e-66 255.0 256 55.1
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 1.4e-65 253.8 229 58.5
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 7.1e-65 251.5 228 58.3
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 4.6e-64 248.8 196 63.3
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 1.3e-63 247.3 262 49.6
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.7e-63 246.9 217 57.6
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 1.7e-63 246.9 221 54.8
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 3.0e-63 246.1 217 57.6
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.0e-63 246.1 217 57.6
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.5e-62 243.8 217 57.6
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 3.3e-62 242.7 196 62.8
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 3.3e-62 242.7 213 59.2
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.3e-62 242.3 217 57.1
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.6e-61 239.2 195 63.6
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 4.7e-61 238.8 213 54.9
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 4.7e-61 238.8 219 55.3
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 6.2e-61 238.4 196 61.2
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.4e-60 237.3 174 70.1
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 3.1e-60 236.1 155 72.9
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 4.0e-60 235.7 258 51.2
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 4.0e-60 235.7 263 49.8
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 5.2e-60 235.3 255 52.5
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.2e-58 229.9 209 59.8
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 1.5e-54 217.2 209 56.9
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 1.6e-53 213.8 261 49.8
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 2.8e-53 213.0 175 62.9
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 1.2e-51 207.6 180 57.2
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.0e-51 206.8 183 59.6
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.2e-48 197.6 164 61.6
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 8.7e-47 191.4 174 56.3
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.6e-46 188.0 164 54.3
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 3.8e-42 176.0 122 69.7
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 3.4e-35 152.9 160 53.8
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 7.1e-33 145.2 132 61.4
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 4.6e-32 142.5 113 62.8
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 3.9e-31 139.4 128 57.8
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 6.7e-31 138.7 216 40.7
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 3.1e-28 129.8 120 54.2
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 5.8e-27 125.6 186 41.9
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 5.8e-27 125.6 133 49.6
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 6.3e-21 105.5 150 46.0
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 1.3e-18 97.8 73 68.5
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 3.8e-18 96.3 133 42.1
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.6e-11 73.6 94 43.6
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 2.3e-07 60.5 98 38.8
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 6.7e-07 58.9 74 44.6
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 1.1e-06 58.2 49 57.1
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 1.5e-06 57.8 75 42.7


User provided reference genes

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