Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 5.5e-141 504.2 241 100.0
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 1.6e-111 406.4 243 78.2
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.7e-110 402.9 243 77.4
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.9e-110 402.1 243 77.8
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 5.0e-110 401.4 243 76.5
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 8.0e-108 394.0 243 76.1
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 4.0e-107 391.7 243 75.3
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 6.8e-107 391.0 243 75.3
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 2.0e-106 389.4 239 77.0
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 3.4e-106 388.7 242 75.6
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.7e-105 386.3 243 75.3
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.7e-105 386.3 243 73.7
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.2e-105 386.0 243 74.5
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.2e-105 386.0 243 74.5
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 3.7e-105 385.2 243 75.3
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 1.8e-104 382.9 244 73.8
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 2.4e-104 382.5 234 75.6
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 5.4e-104 381.3 242 72.7
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 2.0e-103 379.4 242 71.9
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 2.0e-103 379.4 241 69.3
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.7e-103 379.0 237 73.8
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 3.5e-103 378.6 243 72.8
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 3.5e-103 378.6 230 75.2
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 4.6e-103 378.3 244 71.3
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 4.6e-103 378.3 241 73.4
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 5.9e-103 377.9 243 71.6
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 5.9e-103 377.9 237 73.4
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 7.8e-103 377.5 237 73.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 7.8e-103 377.5 237 73.4
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 7.8e-103 377.5 240 71.7
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 7.8e-103 377.5 243 72.8
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.0e-102 377.1 237 73.8
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.0e-102 377.1 243 72.4
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 1.3e-102 376.7 244 70.9
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 2.3e-102 375.9 243 72.4
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 2.3e-102 375.9 242 72.7
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.3e-102 375.9 237 73.0
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 2.3e-102 375.9 244 70.9
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 6.6e-102 374.4 243 69.5
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 8.6e-102 374.0 239 73.2
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 8.6e-102 374.0 239 73.2
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.1e-101 373.6 245 73.5
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.5e-101 373.2 243 72.8
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.5e-101 373.2 243 72.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.3e-101 372.1 244 71.7
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 4.3e-101 371.7 243 70.4
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 4.3e-101 371.7 258 68.6
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 4.3e-101 371.7 237 72.6
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 9.5e-101 370.5 237 72.6
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.1e-100 369.4 244 72.5
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 2.8e-100 369.0 242 70.2
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 4.7e-100 368.2 234 73.5
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 4.7e-100 368.2 274 65.3
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 8.0e-100 367.5 284 62.3
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 8.0e-100 367.5 274 63.9
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.0e-99 367.1 295 61.4
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 5.2e-99 364.8 242 69.4
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.8e-99 364.4 243 70.8
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.2e-98 363.6 242 70.7
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.2e-98 363.6 228 74.6
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 2.6e-98 362.5 242 70.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 4.4e-98 361.7 242 69.4
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 5.8e-98 361.3 244 70.9
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 9.8e-98 360.5 242 69.8
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.7e-97 359.8 244 69.7
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 2.9e-97 359.0 242 68.6
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 2.9e-97 359.0 242 69.0
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 6.4e-97 357.8 242 69.4
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 8.3e-97 357.5 242 69.8
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 8.3e-97 357.5 243 68.3
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 8.3e-97 357.5 244 68.4
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.4e-96 356.7 243 67.9
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.4e-96 356.7 243 67.9
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.4e-96 356.7 241 68.5
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.4e-96 356.7 243 68.3
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.9e-96 356.3 243 67.5
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.9e-96 356.3 244 68.0
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 5.4e-96 354.8 244 70.9
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 7.0e-96 354.4 243 67.5
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.2e-95 353.6 244 69.7
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.6e-95 353.2 244 69.3
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 2.0e-95 352.8 222 73.4
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 6.0e-95 351.3 244 69.3
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.3e-94 350.1 208 77.9
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 3.0e-94 349.0 242 69.0
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 5.6e-93 344.7 211 76.8
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 9.5e-93 344.0 326 54.3
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.6e-92 343.2 230 70.4
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.5e-90 336.7 253 62.8
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 2.2e-89 332.8 242 66.5
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 1.1e-88 330.5 243 64.2
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 3.2e-88 328.9 240 66.2
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.3e-86 323.6 249 59.8
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 1.8e-83 313.2 247 59.1
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 3.7e-81 305.4 279 53.8
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.2e-79 300.4 300 52.3
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.3e-78 297.0 204 67.6
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.3e-78 297.0 241 61.0
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 6.6e-78 294.7 198 68.7
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.1e-77 293.9 205 67.8
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 2.5e-77 292.7 211 67.3
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 6.4e-73 278.1 243 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 3.9e-70 268.9 312 45.8
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.7e-63 246.1 248 50.4
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.0e-62 244.2 249 47.8
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 2.7e-55 219.5 339 41.0
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 6.0e-55 218.4 254 44.9
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 4.3e-53 212.2 240 45.8
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.7e-49 200.3 249 44.6
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 6.7e-46 188.3 110 76.4
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 9.6e-45 184.5 141 63.8
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.7e-44 182.6 125 68.8
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 2.1e-39 166.8 119 64.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.9e-37 160.2 83 81.9
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.4e-27 126.7 96 60.4
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.6e-23 112.8 60 81.7
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.9e-22 109.4 139 46.8
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.0e-18 97.1 76 56.6
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.0e-18 97.1 76 56.6
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 3.6e-15 86.3 67 58.2
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 4.8e-12 75.9 143 37.1
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 4.8e-12 75.9 69 56.5
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 2.7e-10 70.1 49 63.3
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 2.7e-10 70.1 49 63.3
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 4.5e-10 69.3 49 63.3
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.0e-09 68.2 73 42.5
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 3.2e-08 63.2 36 72.2
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 7.2e-08 62.0 87 39.1
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 8.0e-07 58.5 43 58.1
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.8e-06 57.4 76 42.1
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 2.3e-06 57.0 70 37.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 6.8e-06 55.5 65 41.5


User provided reference genes

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