Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 4.6e-175 617.8 322 100.0
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.7e-103 379.4 330 63.6
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.0e-98 363.2 265 70.2
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.7e-95 352.8 281 65.8
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 5.2e-94 348.6 335 62.1
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 6.5e-89 331.6 323 60.7
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.1e-88 330.9 280 65.7
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.7e-87 326.2 289 62.3
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.4e-86 323.9 265 63.8
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.2e-85 320.9 279 64.2
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 1.7e-84 317.0 323 59.1
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.2e-84 316.6 281 62.3
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 8.3e-84 314.7 286 61.9
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 7.0e-83 311.6 289 60.9
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 3.2e-80 302.8 280 60.4
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 9.4e-80 301.2 282 59.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.2e-79 300.8 262 62.2
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 2.1e-79 300.1 280 60.0
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.7e-79 299.7 294 57.8
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 6.1e-79 298.5 258 64.0
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 6.1e-79 298.5 287 59.2
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 8.0e-79 298.1 264 61.0
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 8.0e-79 298.1 280 58.9
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 2.3e-78 296.6 280 60.0
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 3.0e-78 296.2 324 55.2
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 6.8e-78 295.0 273 60.8
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 8.8e-78 294.7 323 54.8
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.5e-77 293.9 324 54.6
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 2.0e-77 293.5 284 58.5
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 3.4e-77 292.7 303 57.1
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 4.4e-77 292.4 324 54.6
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 5.7e-77 292.0 295 56.6
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 7.5e-77 291.6 322 54.0
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 7.5e-77 291.6 259 61.8
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.7e-76 290.4 275 58.5
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.2e-76 290.0 324 55.2
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.8e-76 289.7 287 57.1
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.8e-76 289.7 280 58.9
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 3.7e-76 289.3 265 61.5
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 4.9e-76 288.9 325 52.6
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 4.9e-76 288.9 292 56.8
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.3e-76 288.1 289 58.1
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 8.3e-76 288.1 324 53.4
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 8.3e-76 288.1 324 53.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 8.3e-76 288.1 327 53.5
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.8e-75 287.0 270 60.7
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 3.1e-75 286.2 281 59.1
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 3.1e-75 286.2 325 52.9
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 3.1e-75 286.2 325 52.0
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 7.0e-75 285.0 324 53.1
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 7.0e-75 285.0 258 60.1
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 7.0e-75 285.0 279 58.4
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 7.0e-75 285.0 264 60.2
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 9.2e-75 284.6 276 60.5
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 9.2e-75 284.6 325 52.0
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.2e-74 284.3 279 57.7
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.6e-74 283.9 279 59.9
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 2.0e-74 283.5 280 57.5
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 2.0e-74 283.5 280 57.5
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 2.0e-74 283.5 284 56.7
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 2.0e-74 283.5 284 56.7
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 5.9e-74 282.0 329 53.2
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 5.9e-74 282.0 329 53.2
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 7.7e-74 281.6 288 56.6
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 7.7e-74 281.6 295 55.3
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.0e-73 281.2 284 56.7
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.7e-73 280.4 286 56.6
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 3.8e-73 279.3 326 54.3
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 1.1e-72 277.7 266 57.9
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.5e-72 277.3 281 55.9
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.9e-72 276.9 278 60.1
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 7.3e-72 275.0 265 58.1
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 7.3e-72 275.0 258 58.9
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 9.5e-72 274.6 277 57.8
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.6e-71 273.9 277 57.0
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 2.1e-71 273.5 267 55.8
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 2.8e-71 273.1 279 58.1
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 2.8e-71 273.1 310 51.0
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 3.6e-71 272.7 288 55.2
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 6.1e-71 271.9 286 55.2
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.4e-70 270.8 221 64.7
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 4.0e-70 269.2 284 56.3
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 4.0e-70 269.2 282 58.2
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 6.8e-70 268.5 221 64.7
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.5e-69 267.3 328 47.6
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 2.6e-69 266.5 272 54.0
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.6e-69 266.5 221 64.7
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.4e-69 266.2 221 64.3
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 5.7e-69 265.4 277 54.9
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-68 264.2 284 57.0
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 4.9e-68 262.3 276 54.7
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.1e-67 261.2 295 52.5
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.1e-67 259.2 272 57.7
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 9.2e-67 258.1 318 51.6
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.7e-66 256.5 293 52.9
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.7e-66 256.5 281 54.1
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 3.5e-66 256.1 304 49.3
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 3.5e-66 256.1 318 51.3
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 7.8e-66 255.0 261 57.9
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 7.8e-66 255.0 267 56.9
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.0e-65 254.6 295 53.9
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 3.0e-65 253.1 313 51.8
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.0e-65 252.3 262 56.1
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 5.0e-65 252.3 284 54.6
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 6.6e-65 251.9 284 54.6
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 4.3e-64 249.2 223 61.4
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 4.3e-64 249.2 223 61.4
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.6e-63 247.3 266 54.1
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 2.1e-63 246.9 267 55.1
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.8e-63 246.5 259 56.0
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 2.8e-63 246.5 284 52.8
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 8.0e-63 245.0 259 56.8
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.0e-62 244.6 267 52.8
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 1.0e-62 244.6 283 52.7
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 1.4e-62 244.2 275 51.6
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.4e-62 244.2 251 55.0
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.2e-59 231.5 251 55.8
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 9.2e-59 231.5 163 74.8
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 3.5e-58 229.6 273 49.1
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 4.6e-58 229.2 276 53.3
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 2.3e-57 226.9 244 51.2
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 2.2e-52 210.3 367 39.5
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 1.1e-51 208.0 270 47.8
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.4e-51 207.6 262 49.6
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.9e-48 197.2 265 45.7
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.2e-43 178.3 151 62.3
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 1.1e-27 128.3 198 42.4
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.6e-23 113.2 154 45.5
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.9e-22 109.0 96 55.2
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 9.0e-22 108.6 96 54.2
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 9.0e-22 108.6 96 54.2
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 1.4e-19 101.3 96 53.1
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.4e-19 100.5 154 42.9
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-16 91.7 96 50.0
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 6.9e-14 82.4 255 28.6
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 2.9e-12 77.0 259 27.0
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 2.7e-10 70.5 159 31.4
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 6.0e-10 69.3 105 40.0
RcHm_v2.0_Chr2g0113461 Rosa chinensis HOM05D003481 ORTHO05D004001 2.8e-07 60.5 71 47.9


User provided reference genes

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