Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 0.0e+00 1186.0 600 100.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.7e-252 875.9 599 72.5
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.5e-251 872.1 602 71.6
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 2.8e-250 868.6 599 72.3
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 2.3e-249 865.5 600 71.3
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.2e-242 843.2 602 70.1
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 5.8e-240 834.3 598 68.1
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.7e-239 832.8 598 68.4
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.7e-239 832.8 599 68.4
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.1e-238 827.4 598 67.6
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.7e-236 822.8 602 66.9
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 1.1e-235 820.1 600 66.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 5.6e-235 817.8 598 67.4
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 7.3e-235 817.4 600 66.7
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.1e-233 812.0 598 67.4
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 7.6e-232 807.4 596 65.8
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.3e-231 806.6 598 66.4
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 8.4e-231 803.9 603 65.0
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 2.4e-230 802.4 602 66.1
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.7e-228 796.2 603 65.0
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.9e-227 792.7 614 63.8
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 4.3e-227 791.6 596 65.3
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.1e-225 786.9 602 65.3
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.2e-224 783.5 633 62.9
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 9.9e-224 780.4 596 65.4
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 2.9e-223 778.9 600 64.5
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.9e-223 778.9 623 62.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.4e-222 776.5 592 64.5
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.4e-222 775.8 592 64.5
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 4.2e-222 775.0 594 64.0
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.4e-222 774.6 614 63.0
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 7.1e-222 774.2 604 64.6
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.1e-221 772.7 599 64.8
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.7e-220 769.6 595 63.5
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 5.1e-220 768.1 620 62.6
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 6.6e-220 767.7 598 63.9
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 3.3e-219 765.4 596 63.8
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.6e-218 763.1 611 62.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.6e-218 761.9 618 64.6
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 4.8e-218 761.5 600 63.2
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 6.9e-217 757.7 611 61.5
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.2e-216 756.9 600 62.2
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 2.0e-216 756.1 596 62.1
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 8.4e-215 750.7 600 62.0
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.9e-214 749.6 597 63.1
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.4e-214 749.2 597 61.6
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.2e-214 748.8 595 63.4
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 4.2e-214 748.4 593 61.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 4.2e-214 748.4 581 64.4
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 9.3e-214 747.3 601 62.2
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 9.3e-214 747.3 592 61.5
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.2e-213 746.9 597 62.3
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 2.1e-213 746.1 600 62.3
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.1e-213 746.1 601 61.9
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.1e-213 746.1 594 62.0
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.7e-213 745.7 536 68.7
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.7e-213 745.7 595 63.2
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.5e-213 745.3 600 62.0
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 3.5e-213 745.3 600 62.3
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 4.6e-213 745.0 600 61.0
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.0e-212 743.8 598 62.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.3e-212 743.4 602 60.8
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 5.1e-212 741.5 596 62.9
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.3e-211 738.8 594 61.3
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 7.4e-211 737.6 602 61.1
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 7.4e-211 737.6 593 61.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 9.6e-211 737.3 570 63.2
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 9.6e-211 737.3 602 62.0
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.3e-210 736.9 600 61.8
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 2.8e-210 735.7 602 61.0
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.8e-210 735.7 595 62.2
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.1e-209 733.8 596 62.2
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 1.8e-209 733.0 597 61.0
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.1e-209 732.3 601 61.7
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 9.0e-209 730.7 591 60.9
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 4.9e-207 724.9 591 61.6
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.4e-206 723.4 596 59.9
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.9e-206 723.0 599 59.8
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 9.3e-206 720.7 583 61.2
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.2e-205 720.3 599 59.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.8e-204 716.5 600 60.7
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 3.9e-204 715.3 605 60.2
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.1e-203 713.8 596 59.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 2.5e-203 712.6 606 58.4
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 7.4e-203 711.1 559 62.4
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 9.6e-203 710.7 599 58.3
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 1.6e-202 709.9 603 58.7
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 2.8e-202 709.1 593 59.4
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 6.2e-202 708.0 597 58.8
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.4e-201 706.8 600 57.2
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.4e-201 706.8 599 60.6
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 4.5e-200 701.8 605 58.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 5.8e-200 701.4 605 58.3
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 7.6e-200 701.0 600 59.3
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 4.9e-199 698.4 600 57.8
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.5e-199 698.0 524 63.5
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.4e-199 697.6 597 61.0
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 5.5e-198 694.9 605 57.4
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.7e-197 692.6 608 58.1
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 9.7e-195 684.1 598 58.7
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.3e-194 683.7 599 56.3
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.4e-193 680.2 595 58.5
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 2.4e-193 679.5 592 58.3
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 2.4e-193 679.5 592 58.1
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.0e-192 676.4 599 56.8
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 5.0e-191 671.8 584 57.9
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.2e-190 667.9 594 56.6
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 4.6e-189 665.2 605 60.0
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 6.1e-189 664.8 519 63.2
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.0e-188 664.1 594 56.4
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.0e-188 664.1 594 56.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.5e-187 659.4 594 56.2
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 5.7e-187 658.3 598 57.2
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.2e-186 654.4 594 56.1
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.2e-181 640.6 593 56.8
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.7e-181 639.4 600 55.2
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 4.7e-181 638.6 600 55.8
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.1e-179 634.0 591 56.3
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 5.9e-176 621.7 619 54.0
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.9e-174 616.7 595 55.6
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 3.6e-165 585.9 599 51.9
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.8e-162 575.5 596 52.3
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 6.3e-162 575.1 605 51.1
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 6.6e-151 538.5 468 58.1
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.9e-146 522.3 443 58.5
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.0e-143 514.6 728 43.3
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.2e-133 481.1 394 62.9
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 8.3e-122 441.8 467 49.7
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.4e-121 440.3 628 41.7
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.6e-119 432.2 318 68.2
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 7.3e-118 428.7 612 42.0
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 3.2e-113 413.3 513 44.4
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 7.1e-113 412.1 358 60.6
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.0e-111 408.3 321 61.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.2e-101 372.5 355 55.8
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 8.7e-87 325.5 645 34.3
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.6e-85 321.2 267 62.2
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 2.1e-80 304.3 638 35.7
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.1e-68 265.4 183 71.0
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 3.1e-60 237.3 225 53.3
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 4.1e-60 236.9 197 59.4
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.1e-57 228.8 162 65.4
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.1e-49 202.2 390 39.0
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.5e-49 201.8 135 63.7
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 2.3e-39 167.9 120 65.8
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 3.4e-38 164.1 120 65.0
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.3e-33 147.5 114 62.3
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.2e-32 145.6 114 61.4
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.8e-32 144.4 184 49.5
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.8e-31 141.7 80 81.2
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.4e-28 131.3 207 42.0
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 9.2e-28 129.4 135 51.1
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.2e-28 129.4 92 66.3
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.7e-27 127.9 92 65.2
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.1e-25 122.5 80 72.5
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 8.0e-24 116.3 180 40.6
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 5.2e-23 113.6 82 64.6
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 2.8e-16 91.3 111 46.8
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 3.6e-16 90.9 58 67.2
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 4.0e-15 87.4 126 40.5
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 8.9e-15 86.3 65 61.5
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 7.1e-12 76.6 74 51.4
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 9.5e-09 66.2 41 70.7
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.3e-07 61.6 44 65.9
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 1.5e-06 58.9 35 68.6


User provided reference genes

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