Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 0.0e+00 1172.5 601 100.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.6e-266 922.5 602 77.6
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.4e-265 919.5 598 77.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.7e-260 902.5 602 74.9
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 8.6e-260 900.2 601 75.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.7e-258 894.4 602 74.3
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.0e-257 893.3 601 73.7
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.2e-256 889.8 625 72.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.2e-256 889.8 600 73.8
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 5.8e-256 887.5 590 75.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 7.5e-256 887.1 602 73.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.2e-255 885.6 614 72.1
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.9e-255 885.2 594 74.1
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 8.3e-255 883.6 600 73.2
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 7.0e-254 880.6 606 72.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 4.6e-253 877.9 602 72.6
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.0e-252 876.7 603 72.1
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.0e-252 876.7 593 73.0
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.7e-252 875.9 594 72.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 6.6e-252 874.0 602 73.1
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 8.6e-252 873.6 601 73.4
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.1e-251 873.2 602 72.6
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.1e-251 873.2 603 71.6
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.3e-251 871.3 603 72.0
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 5.6e-251 870.9 601 72.2
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 5.6e-251 870.9 601 72.9
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.2e-250 869.8 568 75.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 3.6e-250 868.2 603 72.1
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.3e-249 865.5 592 73.5
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.3e-249 865.5 602 72.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.0e-249 864.8 596 73.2
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.4e-248 861.7 592 72.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 4.4e-248 861.3 603 72.1
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 5.8e-248 860.9 593 72.7
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 5.8e-248 860.9 601 72.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.3e-247 859.8 603 71.0
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.7e-247 859.4 603 70.5
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-246 856.7 602 70.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.4e-246 856.3 600 72.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-246 856.3 601 72.2
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.4e-246 856.3 601 72.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.4e-246 855.5 595 71.8
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.4e-246 855.5 601 72.4
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.2e-246 855.1 600 72.3
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 5.4e-246 854.4 600 71.2
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 7.1e-246 854.0 601 72.5
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 7.1e-246 854.0 593 72.2
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.6e-245 852.8 603 70.5
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 2.1e-245 852.4 603 70.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 3.5e-245 851.7 622 70.4
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.6e-245 851.3 603 70.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.8e-245 850.5 593 72.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.0e-244 850.1 595 70.9
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 2.3e-244 849.0 595 70.4
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.9e-244 848.2 595 71.9
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 5.1e-244 847.8 595 70.3
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 5.1e-244 847.8 595 70.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 5.1e-244 847.8 595 70.3
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 5.1e-244 847.8 595 70.3
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 5.1e-244 847.8 602 71.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 6.6e-244 847.4 595 70.6
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.6e-244 847.4 603 71.1
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 3.3e-243 845.1 603 69.8
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 3.3e-243 845.1 650 67.2
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 4.3e-243 844.7 596 71.0
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 5.6e-243 844.3 596 70.5
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.6e-243 844.3 597 69.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-242 843.2 594 71.5
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.2e-242 843.2 603 69.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 4.7e-242 841.3 598 69.7
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.7e-242 841.3 603 69.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 6.2e-242 840.9 595 70.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.2e-242 840.9 608 70.4
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 6.2e-242 840.9 593 71.2
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 8.1e-242 840.5 590 70.3
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.1e-241 840.1 602 71.9
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.4e-241 839.7 590 71.0
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 3.1e-241 838.6 600 70.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.0e-241 838.2 592 71.3
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.2e-241 837.8 600 69.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.2e-241 837.8 603 69.3
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.5e-240 836.3 603 69.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 3.4e-240 835.1 596 69.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 3.4e-240 835.1 599 71.0
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.9e-239 832.0 598 69.1
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 6.4e-239 830.9 659 65.3
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 4.1e-238 828.2 595 69.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.4e-238 827.8 596 69.6
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.2e-237 826.6 622 67.8
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.7e-237 825.5 683 63.3
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.0e-236 823.5 599 69.1
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 3.0e-236 822.0 598 68.6
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.5e-235 819.7 594 69.4
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 5.6e-235 817.8 597 68.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 9.6e-235 817.0 617 67.6
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.7e-234 814.7 560 72.5
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.4e-230 802.4 553 72.3
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.1e-229 799.3 591 69.7
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.6e-229 798.1 598 67.4
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 4.3e-227 791.6 563 70.3
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 9.6e-227 790.4 600 68.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 9.6e-227 790.4 550 72.4
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.4e-224 781.9 570 70.4
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.2e-223 779.2 593 66.6
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.8e-223 778.5 506 77.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 6.4e-223 777.7 600 65.8
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.7e-221 772.3 586 68.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.3e-220 770.0 616 64.8
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.0e-220 768.8 586 67.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 5.6e-219 764.6 594 66.0
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.9e-217 757.7 601 66.4
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.2e-215 752.7 639 62.0
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 6.0e-213 744.6 657 58.9
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-209 733.8 478 75.9
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.3e-204 716.8 476 74.2
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 1.8e-201 706.4 494 72.5
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.0e-187 659.8 506 68.6
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.0e-183 645.2 544 62.7
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.5e-183 644.4 603 56.7
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-181 640.6 418 75.1
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.1e-177 627.5 579 55.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.0e-175 620.9 601 54.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-171 607.4 442 69.0
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.3e-156 556.6 437 63.6
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 5.0e-151 538.9 606 49.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 8.3e-138 495.0 326 74.5
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 3.5e-136 489.6 575 47.1
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.9e-135 486.1 367 67.8
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 8.9e-132 474.9 418 58.6
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.3e-118 429.9 314 70.4
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-117 427.9 521 48.2
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-117 427.9 288 74.3
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.6e-109 399.8 248 76.2
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 4.5e-107 392.9 280 70.7
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.7e-104 383.6 438 50.0
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.9e-92 342.4 318 59.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.9e-90 337.0 273 64.8
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 9.7e-78 295.4 687 32.3
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.9e-76 289.3 185 77.8
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 6.5e-74 282.7 558 35.1
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 4.8e-61 240.0 150 76.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.9e-57 228.0 155 74.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 9.4e-57 225.7 154 74.7
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 3.4e-46 190.7 629 28.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.0e-39 169.1 105 76.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.0e-39 167.5 102 76.5
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.6e-32 144.1 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-31 142.5 118 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.0e-30 138.3 185 43.8
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.8e-23 115.2 98 57.1
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-21 109.0 66 77.3
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.2e-19 102.4 99 48.5
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 3.3e-17 94.4 73 63.0
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.3e-17 94.4 79 55.7
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 5.6e-17 93.6 631 23.1
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 2.8e-16 91.3 67 62.7
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 5.8e-14 83.6 49 79.6
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 9.9e-14 82.8 199 32.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.9e-13 81.3 48 79.2
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 5.4e-12 77.0 72 48.6
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-10 72.0 93 44.1
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.5e-09 68.9 53 69.8
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.5e-09 68.9 53 69.8
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.6e-09 67.0 61 55.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 3.4e-06 57.8 54 51.9


User provided reference genes

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