Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1006G001 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.7e-70 268.1 135 100.0
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.1e-24 117.1 70 85.7
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 1.6e-20 103.2 70 70.0
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 6.7e-19 97.8 70 68.6
Lj2A328T81 Lonicera japonica HOM05D000604 ORTHO05D004856 1.9e-18 96.3 69 66.7
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 5.6e-18 94.7 66 71.2
AUR62019648 Chenopodium quinoa HOM05D000604 ORTHO05D004856 7.4e-18 94.4 65 67.7
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 9.6e-18 94.0 66 69.7
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 9.6e-18 94.0 65 67.7
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 2.1e-17 92.8 70 62.9
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 2.8e-17 92.4 67 67.2
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 2.8e-17 92.4 67 67.2
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 2.8e-17 92.4 67 67.2
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 3.6e-17 92.0 67 65.7
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 3.6e-17 92.0 66 68.2
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 4.8e-17 91.7 66 66.7
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 4.8e-17 91.7 65 64.6
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 4.8e-17 91.7 70 62.9
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 4.8e-17 91.7 67 65.7
CSS0014014 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004856 6.2e-17 91.3 70 62.9
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 6.2e-17 91.3 70 64.3
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 8.1e-17 90.9 62 71.0
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 8.1e-17 90.9 67 64.2
Migut.M00570 Erythranthe guttata HOM05D000604 ORTHO05D004856 8.1e-17 90.9 67 64.2
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 1.1e-16 90.5 70 61.4
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 1.1e-16 90.5 70 61.4
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 1.4e-16 90.1 70 62.9
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 1.4e-16 90.1 70 62.9
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 1.8e-16 89.7 126 42.9
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 1.8e-16 89.7 70 64.3
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 2.4e-16 89.4 67 61.2
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.4e-16 89.4 67 62.7
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 3.1e-16 89.0 78 55.1
Migut.M00474 Erythranthe guttata HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 62.7
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 62.7
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 3.1e-16 89.0 121 43.8
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 3.1e-16 89.0 65 66.2
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 62.7
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 62.7
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 62.7
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 65.7
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 3.1e-16 89.0 67 64.2
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 3.1e-16 89.0 70 61.4
DCAR_007039 Daucus carota HOM05D000604 ORTHO05D004856 4.0e-16 88.6 70 60.0
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 4.0e-16 88.6 70 58.6
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 4.0e-16 88.6 70 60.0
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 4.0e-16 88.6 70 60.0
Pp3c7_9260 Physcomitrium patens HOM05D000604 ORTHO05D004856 4.0e-16 88.6 70 62.9
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 5.3e-16 88.2 70 62.9
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 6.9e-16 87.8 70 62.9
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 1.2e-15 87.0 67 64.2
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 1.2e-15 87.0 70 58.6
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 1.2e-15 87.0 65 64.6
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 1.2e-15 87.0 100 47.0
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 1.2e-15 87.0 66 62.1
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 1.5e-15 86.7 126 39.7
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 1.5e-15 86.7 67 64.2
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 2.0e-15 86.3 70 58.6
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 2.0e-15 86.3 66 62.1
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.6e-15 85.9 67 61.2
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 2.6e-15 85.9 121 39.7
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 3.4e-15 85.5 70 58.6
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 3.4e-15 85.5 67 62.7
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 4.5e-15 85.1 70 60.0
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 4.5e-15 85.1 66 60.6
MSTRG.7607 Avicennia marina HOM05D000604 ORTHO05D004856 7.6e-15 84.3 67 61.2
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 9.9e-15 84.0 70 55.7
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 9.9e-15 84.0 66 60.6
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 9.9e-15 84.0 63 60.3
Ah.04g154050 Amaranthus hybridus HOM05D000604 ORTHO05D004856 1.3e-14 83.6 62 59.7
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 2.2e-14 82.8 88 48.9
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 2.2e-14 82.8 66 60.6
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 2.2e-14 82.8 67 59.7
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 2.9e-14 82.4 67 62.7
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.8e-14 82.0 66 59.1
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 3.8e-14 82.0 66 57.6
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 4.9e-14 81.6 70 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1847 Anthoceros agrestis HOM05D000604 ORTHO05D004856 6.4e-14 81.3 69 55.1
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 6.4e-14 81.3 66 57.6
Eucgr.K02063 Eucalyptus grandis HOM05D000604 ORTHO05D004856 6.4e-14 81.3 61 60.7
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 6.4e-14 81.3 70 58.6
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 6.4e-14 81.3 70 58.6
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 1.1e-13 80.5 70 54.3
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 1.1e-13 80.5 121 40.5
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 1.9e-13 79.7 69 55.1
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 3.2e-13 79.0 89 49.4
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 3.2e-13 79.0 70 58.6
Hund13010 Selenicereus undatus HOM05D000604 ORTHO05D004856 3.2e-13 79.0 55 63.6
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 4.2e-13 78.6 70 52.9
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 4.2e-13 78.6 66 57.6
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 4.2e-13 78.6 69 55.1
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 4.2e-13 78.6 67 56.7
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 4.2e-13 78.6 70 57.1
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 5.5e-13 78.2 66 57.6
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 5.5e-13 78.2 63 57.1
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 5.5e-13 78.2 63 57.1
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 5.5e-13 78.2 63 57.1
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 5.5e-13 78.2 63 57.1
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 5.5e-13 78.2 63 57.1
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 5.5e-13 78.2 63 57.1
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 5.5e-13 78.2 70 55.7
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 7.1e-13 77.8 95 49.5
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 9.3e-13 77.4 64 57.8
AUR62006166 Chenopodium quinoa HOM05D000604 ORTHO05D004856 9.3e-13 77.4 64 51.6
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 9.3e-13 77.4 64 51.6
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 1.6e-12 76.6 70 50.0
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 1.6e-12 76.6 70 50.0
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 2.1e-12 76.3 95 48.4
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 4.6e-12 75.1 95 45.3
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 6.0e-12 74.7 63 57.1
EL10Ac6g13453 Beta vulgaris HOM05D000604 ORTHO05D004856 6.0e-12 74.7 56 57.1
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 6.0e-12 74.7 99 43.4
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 7.9e-12 74.3 67 52.2
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 1.0e-11 73.9 64 53.1
SHI01960 Sapria himalayana HOM05D000604 ORTHO05D004856 2.3e-11 72.8 65 52.3
Medtr2g018390 Medicago truncatula HOM05D000604 ORTHO05D004856 3.0e-11 72.4 83 45.8
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 3.0e-11 72.4 63 55.6
Lj1g0003644 Lotus japonicus HOM05D001476 ORTHO05D004856 5.1e-11 71.6 64 57.8
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 8.7e-11 70.9 87 48.3
Medtr7g094670 Medicago truncatula HOM05D001476 ORTHO05D002681 1.1e-10 70.5 63 55.6
Os04g0611500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004856 2.5e-10 69.3 59 54.2
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 1.3e-09 67.0 66 48.5
Medtr7g096260 Medicago truncatula HOM05D000604 ORTHO05D004856 1.4e-08 63.5 63 49.2
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 3.1e-08 62.4 51 62.7
PRCOL_00005574 Prasinoderma coloniale HOM05D000604 ORTHO05D004856 4.0e-08 62.0 57 50.9
Cfa023163 Carpinus fangiana HOM05D000604 ORTHO05D004856 1.2e-07 60.5 61 44.3
CARHR162150 Cardamine hirsuta HOM05D000142 ORTHO05D007638 2.2e-06 56.2 54 50.0
Lalb_Chr25g0287941 Lupinus albus HOM05D000142 ORTHO05D007638 2.9e-06 55.8 55 47.3
Thhalv10010548m.g Eutrema salsugineum HOM05D000142 ORTHO05D007638 4.9e-06 55.1 49 53.1
Actinidia09036 Actinidia chinensis HOM05D000285 ORTHO05D000241 8.4e-06 54.3 66 31.8
BcaC06g32908 Brassica carinata HOM05D000142 ORTHO05D007638 8.4e-06 54.3 50 50.0
BcaC06g33385 Brassica carinata HOM05D000142 ORTHO05D007638 8.4e-06 54.3 50 50.0
C07p46930 Brassica napus HOM05D000142 ORTHO05D007638 8.4e-06 54.3 50 50.0
BolC7t45209H Brassica oleracea HOM05D000142 ORTHO05D007638 8.4e-06 54.3 50 50.0
Sp5g09910 Schrenkiella parvula HOM05D000142 ORTHO05D007638 8.4e-06 54.3 57 45.6
Zm00001eb300260 Zea mays HOM05D000142 ORTHO05D007638 8.4e-06 54.3 59 40.7


User provided reference genes

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