Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 5.1e-94 347.8 187 100.0
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.6e-55 219.9 194 63.4
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 5.2e-54 214.9 196 64.8
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 5.2e-54 214.9 191 62.8
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.8e-54 214.5 195 63.1
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.8e-54 214.5 195 64.1
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 8.8e-54 214.2 199 62.8
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 8.8e-54 214.2 199 62.8
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 8.8e-54 214.2 199 62.8
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.2e-53 213.8 189 65.6
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 7.5e-53 211.1 193 64.2
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 9.8e-53 210.7 195 63.6
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.3e-52 210.3 189 62.4
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.3e-52 210.3 195 62.6
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.3e-52 210.3 195 61.5
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 4.8e-52 208.4 193 65.3
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 4.8e-52 208.4 190 61.1
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 8.3e-52 207.6 194 65.5
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 1.8e-51 206.5 195 62.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.8e-51 206.5 188 60.1
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 3.1e-51 205.7 200 60.0
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 4.1e-51 205.3 198 61.6
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 7.0e-51 204.5 192 60.9
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 9.1e-51 204.1 197 62.4
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.2e-50 203.8 194 60.8
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.6e-50 203.4 195 62.1
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 2.7e-50 202.6 195 60.5
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 2.7e-50 202.6 190 61.1
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 4.5e-50 201.8 195 61.0
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 4.5e-50 201.8 195 61.0
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.0e-49 200.7 194 60.3
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.0e-49 200.7 188 62.2
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 1.3e-49 200.3 190 57.9
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.3e-49 200.3 188 61.7
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 1.7e-49 199.9 191 63.4
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 2.2e-49 199.5 198 60.1
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 2.2e-49 199.5 193 63.7
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 2.9e-49 199.1 195 61.5
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 3.8e-49 198.7 196 63.8
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 5.0e-49 198.4 197 59.9
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 5.0e-49 198.4 193 63.7
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 6.5e-49 198.0 195 60.0
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.9e-48 196.4 191 62.8
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 2.5e-48 196.1 194 60.3
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 7.2e-48 194.5 199 62.3
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 9.4e-48 194.1 187 60.4
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 9.4e-48 194.1 196 61.2
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 9.4e-48 194.1 196 58.2
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 9.4e-48 194.1 188 60.1
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 9.4e-48 194.1 196 58.2
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 1.2e-47 193.7 193 59.1
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.2e-47 193.7 188 58.5
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 2.7e-47 192.6 193 61.1
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 2.7e-47 192.6 197 58.9
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 4.7e-47 191.8 194 58.8
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 6.1e-47 191.4 198 59.1
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 6.1e-47 191.4 203 58.1
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 1.0e-46 190.7 196 61.2
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.4e-46 190.3 191 57.6
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.8e-46 189.9 196 60.2
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.8e-46 189.9 194 60.3
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 2.3e-46 189.5 194 57.2
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 2.3e-46 189.5 195 61.0
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 3.0e-46 189.1 196 58.7
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 4.0e-46 188.7 196 60.2
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 4.0e-46 188.7 196 60.2
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 5.2e-46 188.3 194 62.4
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 5.2e-46 188.3 194 60.8
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 6.8e-46 188.0 198 56.6
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 8.8e-46 187.6 188 61.2
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 8.8e-46 187.6 186 58.6
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 1.2e-45 187.2 191 62.3
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.5e-45 186.8 207 57.0
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 2.0e-45 186.4 192 57.8
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.6e-45 186.0 195 57.4
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 2.6e-45 186.0 185 60.0
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 3.4e-45 185.7 204 55.9
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.4e-45 185.7 191 57.6
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 5.7e-45 184.9 199 57.3
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 5.7e-45 184.9 193 59.1
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 1.3e-44 183.7 208 54.8
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.3e-44 183.7 199 57.3
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.7e-44 183.3 186 59.1
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.7e-44 183.3 196 60.2
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 4.9e-44 181.8 198 56.1
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 6.3e-44 181.4 190 56.3
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 6.3e-44 181.4 199 56.3
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 8.3e-44 181.0 187 56.7
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.1e-43 180.6 194 59.3
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 9.1e-43 177.6 194 56.7
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 1.6e-42 176.8 187 55.1
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 2.7e-42 176.0 188 57.4
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.7e-42 176.0 194 56.2
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 2.7e-42 176.0 193 55.4
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 3.5e-42 175.6 196 55.6
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 3.5e-42 175.6 196 55.6
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 4.5e-42 175.3 195 55.4
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.5e-42 175.3 195 55.4
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 5.9e-42 174.9 182 58.2
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.7e-42 174.5 194 55.2
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.7e-42 174.5 194 55.2
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 7.7e-42 174.5 193 54.4
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.9e-41 172.6 189 55.0
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.9e-41 172.6 197 54.8
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 5.0e-41 171.8 188 55.3
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 6.6e-41 171.4 156 62.2
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 8.6e-41 171.0 192 54.7
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.1e-40 170.6 197 53.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.1e-40 170.6 190 56.8
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 1.1e-40 170.6 189 55.0
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 1.9e-40 169.9 197 53.3
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 1.9e-40 169.9 197 53.3
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 2.5e-40 169.5 197 54.3
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 3.3e-40 169.1 200 53.5
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 4.3e-40 168.7 172 58.1
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 4.3e-40 168.7 190 55.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 4.3e-40 168.7 179 57.5
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 2.8e-39 166.0 198 55.1
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 2.8e-39 166.0 198 55.1
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 4.7e-39 165.2 187 58.3
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 6.1e-39 164.9 197 52.8
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 6.1e-39 164.9 168 58.9
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 8.0e-39 164.5 183 54.6
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.4e-38 163.7 193 53.4
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.8e-38 163.3 191 54.5
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 2.3e-38 162.9 195 53.3
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 3.0e-38 162.5 183 54.6
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.0e-38 162.5 191 52.9
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 6.4e-36 154.8 161 59.6
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 8.3e-36 154.5 189 52.4
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 8.3e-36 154.5 178 50.6
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.8e-35 153.3 180 53.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.3e-33 147.1 142 54.9
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.6e-32 141.7 142 54.2
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 5.6e-32 141.7 142 52.8
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 7.3e-32 141.4 172 50.0
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 6.2e-31 138.3 172 48.8
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 4.0e-30 135.6 183 45.9
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.2e-29 134.0 198 47.0
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 2.0e-29 133.3 116 62.1
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 5.8e-29 131.7 168 48.8
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 3.7e-28 129.0 143 49.0
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 1.9e-27 126.7 167 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.2e-27 125.9 134 50.7
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 3.9e-25 119.0 149 46.3
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 6.4e-20 101.7 182 42.3
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.4e-19 100.5 138 44.9
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.9e-19 100.1 150 40.7
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.2e-19 99.4 111 52.3
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 3.5e-18 95.9 77 67.5
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 6.0e-18 95.1 119 45.4
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 9.5e-16 87.8 118 44.9
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.1e-15 86.7 60 70.0
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 5.2e-14 82.0 166 38.0
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 6.8e-14 81.6 155 44.5
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 8.9e-14 81.3 103 50.5
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.5e-13 80.5 125 43.2
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 1.5e-13 80.5 125 44.8
Cre10.g452100 Chlamydomonas reinhardtii HOM05D004549 ORTHO05D005390 3.2e-11 72.8 158 35.4
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 5.4e-11 72.0 145 33.1


User provided reference genes

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