Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 0.0e+00 1194.1 668 100.0
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.3e-202 708.4 657 62.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.9e-201 704.9 657 61.8
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 1.7e-195 686.8 621 62.5
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 4.8e-195 685.3 631 62.1
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.2e-193 680.6 658 59.7
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.1e-191 674.1 678 58.6
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.7e-190 669.5 653 58.8
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-189 667.2 671 59.8
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-189 667.2 671 59.8
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-189 667.2 671 59.8
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-189 666.8 674 57.9
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 3.0e-189 666.0 658 60.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 5.2e-189 665.2 643 59.4
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-188 664.1 672 59.1
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.4e-188 662.1 638 59.2
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 7.5e-188 661.4 680 57.6
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.5e-188 661.4 643 58.6
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.2e-187 659.8 674 57.1
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 8.2e-187 657.9 645 58.6
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 8.2e-187 657.9 688 57.7
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.4e-186 657.1 667 57.9
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.8e-186 656.8 644 57.8
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 7.0e-186 654.8 667 57.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 2.0e-185 653.3 671 56.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 4.5e-185 652.1 640 58.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 5.0e-184 648.7 646 59.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-183 647.5 665 56.7
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 5.5e-183 645.2 669 56.7
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.6e-182 642.5 665 56.4
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 4.7e-182 642.1 659 56.6
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.1e-182 641.7 646 57.1
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.0e-181 641.0 637 58.9
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 2.3e-181 639.8 680 55.6
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-181 639.4 632 57.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 8.8e-181 637.9 671 58.1
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.6e-180 636.3 634 58.2
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 3.4e-180 636.0 661 56.7
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.4e-180 636.0 672 56.4
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.4e-180 636.0 667 55.8
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 5.7e-180 635.2 626 57.2
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 7.5e-180 634.8 682 56.7
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-179 634.0 675 55.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.3e-179 634.0 658 57.4
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.3e-179 634.0 674 55.8
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.8e-179 632.9 655 56.3
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.8e-179 632.9 634 58.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.8e-179 632.9 678 55.5
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.8e-179 632.9 622 58.8
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 4.8e-179 632.1 672 56.7
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 6.3e-179 631.7 635 57.3
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 6.3e-179 631.7 634 57.9
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.4e-178 628.6 669 57.1
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 5.4e-178 628.6 671 54.2
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.6e-177 627.1 699 54.2
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.6e-176 621.7 662 55.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 8.6e-176 621.3 670 55.1
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 3.3e-175 619.4 671 54.4
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.3e-175 619.4 673 55.3
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 5.5e-175 618.6 631 57.4
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 9.5e-175 617.8 663 55.7
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 9.5e-175 617.8 641 55.9
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.2e-174 617.5 681 54.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.1e-174 616.7 668 55.8
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 8.0e-174 614.8 680 54.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.4e-173 614.0 680 55.1
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.8e-173 613.6 756 51.5
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 2.3e-173 613.2 681 54.9
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.0e-173 612.8 657 54.8
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.2e-173 612.1 686 56.4
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-172 610.9 702 52.6
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 3.4e-172 609.4 667 55.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.4e-172 609.4 671 54.4
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 5.7e-172 608.6 611 57.0
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 5.7e-172 608.6 638 55.3
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 9.8e-172 607.8 678 54.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.8e-171 606.3 668 53.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.1e-170 604.4 671 53.7
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.4e-170 604.0 685 53.7
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.8e-170 603.6 671 53.2
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.8e-170 603.6 654 52.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 9.2e-170 601.3 648 55.4
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.0e-169 600.1 666 53.6
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.7e-169 599.7 643 54.9
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.3e-168 597.4 682 52.5
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.3e-168 596.7 687 54.7
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.5e-167 593.2 682 52.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 4.3e-167 592.4 660 54.5
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.6e-166 590.5 669 54.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 2.3e-165 586.6 709 51.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 6.8e-165 585.1 673 53.5
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.4e-164 582.4 683 52.0
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.9e-163 579.7 518 59.8
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 9.2e-162 574.7 611 55.5
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.0e-160 569.7 678 53.4
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 3.0e-160 569.7 687 52.0
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.9e-160 569.3 674 52.7
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.9e-160 569.3 678 53.4
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 6.6e-160 568.5 658 53.3
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 6.6e-160 568.5 674 52.7
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.6e-160 568.2 674 52.4
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 3.3e-159 566.2 642 54.8
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.3e-159 565.1 651 53.6
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.6e-158 563.9 674 52.5
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.7e-155 553.9 554 57.8
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 2.9e-155 553.1 563 56.3
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 8.6e-152 541.6 549 54.3
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.5e-151 540.8 576 56.9
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.9e-147 526.6 673 48.9
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-144 517.3 669 49.5
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.2e-142 508.8 479 57.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-137 493.8 640 47.5
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 6.6e-136 488.8 653 46.2
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.9e-135 487.3 511 58.9
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 7.3e-135 485.3 543 56.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 4.0e-133 479.6 547 53.7
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-129 468.0 638 47.5
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.0e-128 464.9 555 52.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 5.1e-128 462.6 680 43.8
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 6.6e-128 462.2 511 53.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 3.8e-123 446.4 455 55.2
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 2.6e-116 423.7 640 43.6
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.6e-113 414.5 651 45.0
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 7.4e-111 405.6 416 54.3
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.1e-109 401.7 486 50.8
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 4.2e-106 389.8 460 55.0
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 9.3e-106 388.7 628 41.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.3e-103 380.2 453 54.7
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.4e-101 374.8 410 55.9
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 9.0e-101 372.1 622 42.4
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 4.8e-94 349.7 426 47.4
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-78 297.4 332 51.8
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-70 271.9 322 54.3
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.1e-69 268.9 681 35.4
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.1e-61 242.3 705 31.5
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.3e-59 234.6 198 61.1
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.9e-59 234.2 214 56.1
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.5e-55 221.9 173 63.6
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 4.9e-54 216.9 316 45.3
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.3e-54 216.1 347 41.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.8e-48 198.4 212 52.8
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 3.4e-47 194.1 658 31.6
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 1.5e-39 168.7 151 57.6
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.6e-39 167.9 151 57.6
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 7.5e-39 166.4 182 49.5
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 8.3e-38 162.9 222 45.0
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.2e-36 159.1 129 62.8
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.1e-36 158.3 182 47.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.1e-36 158.3 175 50.9
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.1e-34 152.5 161 60.9
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.6e-33 147.5 173 49.1
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.1e-32 146.0 247 43.3
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.8e-32 145.2 119 61.3
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.9e-31 139.4 168 57.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.5e-26 125.6 150 48.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.8e-24 118.6 95 64.2
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.4e-24 118.2 106 56.6
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 7.6e-23 113.2 187 38.5
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.7e-22 112.1 96 59.4
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.4e-22 109.8 98 61.2
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.1e-21 109.4 94 59.6
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-21 107.8 92 59.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-21 107.8 92 59.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-21 107.8 92 59.8
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.4e-21 107.1 95 62.1
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.0e-20 103.6 100 59.0
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.9e-18 98.6 90 60.0
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 2.4e-16 91.7 78 62.8
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.4e-15 87.4 102 42.2
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.2e-14 85.1 133 47.4
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 1.1e-13 82.8 77 58.4
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-12 79.3 66 57.6
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 6.0e-12 77.0 107 37.4
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.3e-11 75.1 47 70.2
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.6e-10 70.5 49 63.3
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 2.1e-09 68.6 74 50.0
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.8e-08 65.5 49 59.2
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.2e-07 62.8 45 68.9
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.4e-07 61.2 647 22.6
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 4.5e-07 60.8 47 57.4


User provided reference genes

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