Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.1e-63 245.4 160 100.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.3e-41 172.2 159 62.9
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 5.6e-33 144.8 171 51.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.6e-33 144.8 171 49.7
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 7.3e-33 144.4 171 49.7
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 7.3e-33 144.4 171 47.4
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 7.3e-33 144.4 171 49.1
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.3e-32 143.7 171 48.0
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.6e-32 143.3 171 49.1
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.1e-32 142.9 171 49.1
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.1e-32 142.9 171 50.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.1e-32 142.9 171 49.1
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.1e-32 142.9 171 49.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.8e-32 142.5 171 46.8
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.8e-32 142.5 171 49.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.8e-32 142.5 171 47.4
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 3.6e-32 142.1 171 48.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 3.6e-32 142.1 171 48.5
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 3.6e-32 142.1 171 49.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.6e-32 142.1 171 49.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.8e-32 141.7 171 48.0
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 4.8e-32 141.7 171 48.5
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 6.2e-32 141.4 171 51.5
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 8.1e-32 141.0 171 49.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 8.1e-32 141.0 171 49.1
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 8.1e-32 141.0 171 48.5
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.1e-32 141.0 171 48.5
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.1e-32 141.0 171 48.5
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 8.1e-32 141.0 171 50.9
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-31 140.6 130 62.3
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.1e-31 140.6 171 48.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.1e-31 140.6 174 48.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.1e-31 140.6 171 49.7
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.1e-31 140.6 171 47.4
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.4e-31 140.2 171 50.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.4e-31 140.2 171 48.5
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.4e-31 140.2 171 48.5
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-31 140.2 171 48.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.4e-31 140.2 171 49.1
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.8e-31 139.8 171 48.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.4e-31 139.4 171 48.5
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.4e-31 139.4 171 47.4
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.4e-31 139.4 171 48.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.4e-31 139.4 171 48.5
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.1e-31 139.0 171 48.0
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.1e-31 139.0 171 48.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 4.0e-31 138.7 171 46.8
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 4.0e-31 138.7 171 47.4
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 4.0e-31 138.7 171 48.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.3e-31 138.3 170 48.8
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.3e-31 138.3 170 48.8
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 5.3e-31 138.3 171 46.8
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.9e-31 137.9 171 47.4
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 6.9e-31 137.9 170 48.2
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 6.9e-31 137.9 171 47.4
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 9.0e-31 137.5 171 47.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.5e-30 136.7 168 50.0
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.6e-30 136.0 171 45.6
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.4e-30 135.6 171 46.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 3.4e-30 135.6 171 47.4
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.5e-30 135.2 171 45.0
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 5.8e-30 134.8 171 46.8
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 7.6e-30 134.4 171 45.6
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 7.6e-30 134.4 171 48.5
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.3e-29 133.7 171 45.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.3e-29 133.7 171 46.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.7e-29 133.3 171 46.8
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.2e-29 132.9 171 46.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 4.9e-29 131.7 171 46.2
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 8.4e-29 131.0 171 46.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 8.4e-29 131.0 171 46.2
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 8.4e-29 131.0 171 46.2
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.1e-28 130.6 171 45.6
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.1e-28 130.6 171 45.6
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.9e-28 129.8 171 42.7
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.4e-28 129.4 171 43.9
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.4e-28 129.4 171 43.9
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.4e-28 129.4 171 43.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.2e-28 129.0 171 43.3
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-28 129.0 171 43.3
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 3.2e-28 129.0 171 43.3
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.2e-28 129.0 171 43.3
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.2e-28 128.6 171 42.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.4e-28 128.3 171 48.5
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.4e-28 128.3 171 48.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 7.1e-28 127.9 171 42.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 7.1e-28 127.9 171 43.3
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 7.1e-28 127.9 171 42.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 9.3e-28 127.5 171 43.3
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-27 127.1 171 42.7
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.2e-27 127.1 171 46.2
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.6e-27 126.7 171 43.3
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.6e-27 126.7 171 43.3
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.7e-27 125.9 171 42.7
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.7e-27 125.9 171 42.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.6e-27 125.2 171 45.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.0e-27 124.8 171 40.9
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.1e-26 121.7 171 40.4
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 8.7e-26 120.9 171 39.8
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.7e-26 120.9 171 40.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-25 119.8 87 71.3
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.9e-25 119.8 162 45.7
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 8.1e-24 114.4 171 42.1
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.4e-23 112.8 170 38.8
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.0e-23 112.1 171 42.7
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.9e-23 111.3 70 81.4
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.5e-22 110.2 169 39.1
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 4.5e-22 108.6 167 42.5
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.8e-21 105.5 167 37.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.6e-19 100.1 170 37.6
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.6e-19 100.1 143 44.8
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.0e-18 97.4 165 38.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 3.9e-18 95.5 83 59.0
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.1e-18 95.1 162 36.4
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 8.7e-18 94.4 83 55.4
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-17 94.0 83 57.8
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.5e-17 93.6 169 36.7
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 4.3e-17 92.0 83 53.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 7.4e-17 91.3 148 38.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.4e-15 87.0 169 34.9
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 3.1e-15 85.9 164 36.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 5.3e-15 85.1 55 78.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 5.3e-15 85.1 128 42.2
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.2e-14 84.0 83 54.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.0e-13 80.9 132 42.4
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.9e-13 79.3 149 37.6
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 3.8e-13 79.0 84 51.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 6.5e-13 78.2 126 40.5
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 5.9e-06 55.1 111 37.8


User provided reference genes

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