Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 3036.1 1504 100.0
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1635.5 1508 54.4
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1588.2 1505 53.4
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1550.0 1514 52.2
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1545.0 1507 52.2
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1541.6 1497 52.0
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1524.6 1513 51.2
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1523.8 1507 52.0
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1486.1 1534 49.7
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1471.1 1539 49.6
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1461.0 1508 49.9
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1453.3 1498 50.3
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1448.7 1519 49.4
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1448.3 1506 49.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1440.2 1460 50.4
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1436.0 1498 49.9
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1401.7 1518 48.2
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1392.9 1545 48.3
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1385.5 1510 48.7
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1382.1 1505 48.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1378.6 1504 48.1
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1377.8 1513 48.2
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1372.1 1511 47.8
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1368.6 1500 48.1
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1366.7 1505 48.0
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1366.7 1520 47.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1365.5 1501 47.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1364.7 1501 48.0
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1360.1 1607 46.1
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1359.4 1501 48.0
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1358.2 1510 48.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1356.3 1498 47.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1352.4 1511 47.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1352.4 1496 47.3
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1350.9 1523 46.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1344.3 1500 47.3
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1341.6 1498 47.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1340.1 1501 46.1
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1335.5 1496 47.7
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1333.9 1497 46.3
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1333.2 1522 46.6
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1333.2 1522 46.6
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1332.4 1516 47.2
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1330.1 1438 48.7
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1320.8 1497 46.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1316.2 1500 45.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1314.7 1499 46.3
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1313.1 1510 46.6
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1305.8 1505 47.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1301.2 1499 46.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1297.7 1509 46.2
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1290.8 1511 45.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1288.5 1510 45.2
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1286.9 1493 45.3
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1286.2 1516 44.9
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1281.2 1506 45.7
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1278.8 1526 46.1
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1275.0 1524 44.6
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1261.1 1509 44.9
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1256.1 1498 45.2
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1250.0 1288 49.3
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1223.4 1499 44.4
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1204.9 1449 43.8
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1197.6 1507 43.3
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1178.3 1510 42.4
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1173.7 1237 49.6
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1172.9 1526 42.4
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1169.1 1747 38.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1167.1 1519 42.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1163.7 1507 43.0
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1162.9 1203 51.0
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1150.6 1516 41.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1150.6 1519 42.2
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1146.7 1530 43.1
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1135.6 1514 41.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1127.5 1515 41.4
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1127.1 1516 41.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1126.7 1506 42.7
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1123.2 1517 42.1
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1121.3 1542 40.8
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1120.9 1516 41.6
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1116.7 1546 40.9
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1109.4 1544 42.4
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1101.7 1553 41.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1092.4 1159 49.2
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1078.9 1378 43.5
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.3e-309 1066.2 1103 50.6
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.8e-298 1030.0 1134 47.6
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.9e-296 1021.9 1131 47.0
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 3.3e-292 1009.2 1295 42.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 7.3e-292 1008.1 1053 49.3
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.6e-285 984.9 1148 45.8
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-274 951.0 1121 47.1
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.4e-274 950.7 1518 37.9
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 4.5e-273 945.7 1538 37.9
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 3.9e-269 932.6 985 50.1
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.0e-261 907.9 1527 36.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 8.8e-213 745.3 1414 34.2
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 8.1e-190 669.1 601 56.7
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.1e-183 648.7 571 57.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.5e-177 627.1 976 37.0
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.3e-176 624.4 1019 37.1
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 5.1e-168 596.7 571 53.8
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.4e-157 562.0 601 46.8
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 6.2e-150 536.6 642 42.8
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.2e-147 528.1 570 50.5
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.3e-142 512.3 610 47.0
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.2e-139 501.5 1034 31.7
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.8e-139 500.7 577 48.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.0e-136 492.7 1034 31.7
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 6.7e-136 490.0 1035 31.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 6.1e-113 413.7 497 46.3
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.8e-110 404.8 565 41.4
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-104 385.2 991 28.6
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 4.5e-100 370.9 1084 28.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 3.6e-89 334.7 526 39.2
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.4e-77 296.2 330 43.6
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.6e-74 284.3 376 41.5
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 4.7e-73 281.2 504 33.3
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 4.9e-70 271.2 358 39.7
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 2.8e-65 255.4 461 33.0
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.6e-65 255.0 317 41.0
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 6.2e-65 254.2 284 44.0
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.4e-64 253.1 305 42.3
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 2.4e-64 252.3 451 38.1
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 8.9e-64 250.4 407 39.6
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.4e-63 248.1 295 48.5
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 5.8e-63 247.7 200 61.0
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 9.9e-63 246.9 275 45.5
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-61 243.0 540 29.4
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 2.7e-60 238.8 844 25.7
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.3e-59 236.5 212 57.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.3e-59 235.7 324 40.4
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.6e-57 228.4 247 47.4
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 9.9e-55 220.3 209 50.7
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 8.4e-54 217.2 456 30.7
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.7e-46 193.0 394 31.0
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 2.7e-44 185.7 390 34.6
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.2e-41 174.5 131 61.8
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.1e-40 173.7 117 64.1
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 2.4e-40 172.6 279 35.8
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-39 169.9 123 65.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-36 159.8 221 40.3
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-31 143.3 193 40.4
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.0e-31 142.9 116 61.2
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.2e-30 139.4 108 61.1
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 2.2e-30 139.4 200 40.0
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.7e-28 132.5 182 40.1
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.0e-27 130.6 188 40.4
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 5.1e-27 128.3 268 30.6
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 6.3e-25 121.3 127 45.7
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-24 120.6 249 34.1
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 3.3e-18 99.0 143 37.1
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.3e-17 97.1 676 22.5
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 9.1e-16 90.9 104 48.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 4.4e-10 72.0 98 43.9
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 9.7e-10 70.9 98 43.9
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 9.7e-10 70.9 343 25.7
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.8e-09 69.3 42 73.8
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.1e-08 65.9 57 47.4
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 7.7e-07 61.2 38 73.7
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.7e-06 60.1 92 37.0
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 5.0e-06 58.5 49 57.1


User provided reference genes

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