Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-97 360.1 205 100.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.3e-62 241.9 192 71.4
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.4e-38 162.2 177 55.9
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 3.6e-32 142.5 175 46.9
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 6.1e-32 141.7 119 59.7
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.4e-31 140.6 105 62.9
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.4e-31 140.6 110 62.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.4e-31 140.6 110 62.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.4e-31 140.6 110 62.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.4e-31 140.6 108 63.0
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.8e-31 140.2 110 62.7
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.3e-31 139.8 110 62.7
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 2.3e-31 139.8 108 61.1
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 3.0e-31 139.4 109 65.1
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.0e-31 139.4 103 64.1
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 4.0e-31 139.0 175 46.9
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 5.2e-31 138.7 108 63.9
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 5.2e-31 138.7 103 62.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 6.7e-31 138.3 103 63.1
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.8e-31 137.9 103 64.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.8e-31 137.9 103 64.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.2e-30 137.5 110 60.0
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-30 137.5 105 61.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-30 137.5 109 62.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.2e-30 137.5 110 61.8
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.2e-30 137.5 103 63.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.2e-30 137.5 103 64.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.2e-30 137.5 108 61.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-30 137.1 105 61.9
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.5e-30 137.1 101 65.3
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.5e-30 137.1 105 62.9
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.5e-30 137.1 112 58.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.0e-30 136.7 103 63.1
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 2.6e-30 136.3 176 46.6
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 2.6e-30 136.3 176 46.6
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.6e-30 136.3 103 63.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.6e-30 136.3 103 62.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-30 136.0 110 60.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-30 136.0 108 62.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-30 136.0 110 60.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.3e-30 136.0 110 60.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.3e-30 136.0 110 60.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 3.3e-30 136.0 108 62.0
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 3.3e-30 136.0 103 64.1
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 3.3e-30 136.0 178 46.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.4e-30 135.6 102 62.7
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.4e-30 135.6 103 62.1
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.4e-30 135.6 103 62.1
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 4.4e-30 135.6 175 46.3
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 5.7e-30 135.2 103 62.1
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.7e-30 135.2 98 66.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 5.7e-30 135.2 103 61.2
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 5.7e-30 135.2 110 60.9
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.7e-30 135.2 102 63.7
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 5.7e-30 135.2 103 62.1
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.7e-30 135.2 117 59.0
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 7.5e-30 134.8 102 62.7
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 7.5e-30 134.8 103 62.1
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.5e-30 134.8 109 60.6
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 7.5e-30 134.8 103 61.2
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 7.5e-30 134.8 177 46.3
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 7.5e-30 134.8 102 63.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.3e-29 134.0 102 61.8
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.3e-29 134.0 114 57.0
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.3e-29 134.0 110 57.3
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.3e-29 134.0 110 60.0
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.7e-29 133.7 103 61.2
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.7e-29 133.7 103 62.1
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.7e-29 133.7 103 61.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.7e-29 133.7 103 63.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.7e-29 133.7 103 62.1
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.7e-29 133.7 107 59.8
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.7e-29 133.7 103 63.1
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.2e-29 133.3 103 61.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.2e-29 133.3 175 45.7
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.8e-29 132.9 103 63.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.8e-29 132.9 103 63.1
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.8e-29 132.9 103 60.2
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 2.8e-29 132.9 103 61.2
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.7e-29 132.5 102 60.8
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.7e-29 132.5 105 61.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.7e-29 132.5 93 65.6
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 3.7e-29 132.5 101 61.4
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 3.7e-29 132.5 103 61.2
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.7e-29 132.5 105 60.0
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 4.8e-29 132.1 103 60.2
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.8e-29 132.1 103 59.2
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.8e-29 132.1 103 59.2
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 4.8e-29 132.1 103 60.2
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.8e-29 132.1 103 60.2
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.8e-29 132.1 103 60.2
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 6.3e-29 131.7 95 63.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 6.3e-29 131.7 102 60.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 8.2e-29 131.3 110 57.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 8.2e-29 131.3 105 59.0
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 8.2e-29 131.3 103 60.2
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 8.2e-29 131.3 106 57.5
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.1e-28 131.0 153 47.1
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.4e-28 130.6 117 56.4
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.4e-28 130.6 175 45.1
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.4e-28 129.8 103 59.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.4e-28 129.8 104 60.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 3.1e-28 129.4 95 63.2
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 3.1e-28 129.4 106 60.4
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.1e-28 129.0 175 43.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.1e-28 129.0 105 61.0
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 4.1e-28 129.0 102 59.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.1e-28 129.0 95 64.2
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 5.3e-28 128.6 145 51.0
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 5.3e-28 128.6 103 58.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 7.0e-28 128.3 104 57.7
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 7.0e-28 128.3 103 58.3
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.0e-28 128.3 103 58.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 9.1e-28 127.9 95 64.2
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 9.1e-28 127.9 175 42.9
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.2e-27 127.5 93 63.4
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.6e-27 127.1 119 54.6
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 2.0e-27 126.7 93 63.4
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.0e-27 126.7 105 60.0
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 2.0e-27 126.7 95 64.2
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 3.5e-27 125.9 102 59.8
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 4.5e-27 125.6 119 52.9
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 4.5e-27 125.6 102 58.8
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.5e-27 125.6 91 69.2
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.5e-27 125.6 93 63.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 5.9e-27 125.2 119 52.9
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 7.7e-27 124.8 95 60.0
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.0e-26 124.4 170 44.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.3e-26 124.0 93 61.3
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 2.2e-26 123.2 102 57.8
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 2.9e-26 122.9 135 48.9
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.9e-26 122.9 119 52.9
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 2.9e-26 122.9 96 57.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 5.0e-26 122.1 103 56.3
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 6.5e-26 121.7 96 59.4
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 8.5e-26 121.3 138 50.0
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 8.5e-26 121.3 102 56.9
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.5e-25 119.8 122 51.6
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.2e-25 119.4 103 54.4
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 4.2e-25 119.0 91 59.3
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.6e-24 117.1 107 53.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-24 117.1 182 41.2
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.1e-24 116.7 123 47.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.0e-24 114.8 110 54.5
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.4e-23 114.0 136 44.9
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 4.0e-23 112.5 92 59.8
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 4.0e-23 112.5 91 59.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 6.8e-23 111.7 92 57.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 2.6e-22 109.8 93 58.1
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 7.5e-22 108.2 85 62.4
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 7.5e-22 108.2 92 55.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 8.3e-21 104.8 90 54.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-20 104.0 95 55.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 5.4e-20 102.1 110 48.2
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 2.7e-19 99.8 79 59.5
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.3e-18 97.4 93 47.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.9e-18 96.3 88 56.8
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.2e-16 90.9 103 46.6
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.8e-16 89.7 87 54.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 4.1e-12 75.9 133 38.3
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 7.8e-11 71.6 51 60.8
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.7e-10 70.5 54 57.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-10 70.1 61 50.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.0e-10 68.9 68 44.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.9e-09 67.0 52 51.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.5e-09 66.6 52 51.9
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 5.6e-09 65.5 140 35.7
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 9.5e-09 64.7 140 35.7
Cfa023258 Carpinus fangiana HOM05D003917 ORTHO05D126232 4.7e-08 62.4 81 38.3
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.4e-07 60.8 38 73.7
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 1.8e-07 60.5 98 32.7
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 9.8e-06 54.7 39 61.5
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 9.8e-06 54.7 38 65.8


User provided reference genes

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