Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 0.0e+00 1230.3 612 100.0
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 6.8e-111 405.6 651 37.8
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.0e-103 381.7 577 40.0
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.3e-103 380.6 582 39.5
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.5e-102 377.9 574 40.2
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.4e-100 370.5 582 37.5
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.9e-98 363.6 582 39.0
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.9e-98 363.6 581 39.1
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.1e-96 357.5 603 36.5
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.1e-96 357.5 603 36.7
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 5.2e-95 352.8 582 38.3
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.3e-93 348.2 583 39.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.3e-93 348.2 577 37.4
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.7e-93 347.8 580 39.5
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.9e-93 347.1 577 38.1
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.7e-93 346.7 580 37.8
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.4e-92 344.7 579 37.1
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.2e-92 343.6 579 37.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.0e-90 337.0 584 38.0
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 3.9e-90 336.7 583 37.7
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 3.9e-90 336.7 572 37.2
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 8.6e-90 335.5 579 35.9
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.5e-89 334.7 581 37.7
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.6e-88 330.1 583 36.9
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.4e-87 328.2 582 36.3
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.8e-87 327.8 580 36.7
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.3e-87 327.4 581 34.6
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.3e-87 327.4 584 36.8
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.0e-86 324.3 582 38.8
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 2.6e-86 323.9 585 34.7
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 5.8e-86 322.8 573 37.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 7.5e-86 322.4 586 36.0
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 9.8e-86 322.0 582 38.3
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.7e-85 321.2 574 36.2
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 2.9e-85 320.5 584 34.8
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 3.7e-85 320.1 581 36.1
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 4.9e-85 319.7 578 36.2
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 6.4e-85 319.3 579 35.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 4.1e-84 316.6 578 36.3
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 4.1e-84 316.6 581 37.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.4e-84 316.2 578 38.2
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 5.4e-84 316.2 574 35.5
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 7.8e-83 312.4 582 35.1
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.3e-82 311.6 584 34.4
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 3.0e-82 310.5 575 35.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.5e-81 308.1 583 34.8
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 7.3e-81 305.8 581 36.8
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.3e-81 305.8 580 33.3
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 9.5e-81 305.4 582 35.2
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.1e-80 304.3 575 36.0
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.1e-80 304.3 582 34.2
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 6.2e-80 302.8 576 36.1
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 8.1e-80 302.4 584 36.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.4e-79 301.6 486 38.5
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.3e-79 300.8 575 35.8
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 3.1e-79 300.4 578 36.0
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 4.0e-79 300.1 572 35.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 4.0e-79 300.1 577 34.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.8e-79 299.3 576 33.3
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.8e-79 299.3 578 34.9
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 6.8e-79 299.3 585 34.5
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.5e-78 298.1 572 33.7
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.5e-78 298.1 455 39.1
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 1.5e-78 298.1 576 34.5
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 3.4e-78 297.0 576 34.2
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.4e-78 296.6 571 32.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.4e-78 296.6 573 35.3
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 7.5e-78 295.8 579 34.4
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 9.9e-78 295.4 578 35.5
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 9.9e-78 295.4 582 34.0
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.9e-78 295.4 573 35.1
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.3e-77 295.0 577 34.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.3e-77 295.0 583 34.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.7e-77 294.7 582 34.2
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.2e-77 294.3 577 34.5
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.9e-77 293.9 577 34.5
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.7e-77 293.5 585 35.0
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 4.9e-77 293.1 578 35.1
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.1e-76 292.0 475 38.3
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 7.1e-76 289.3 606 32.3
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.3e-73 280.4 583 34.5
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 4.3e-73 280.0 573 31.8
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.2e-72 278.5 580 31.9
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 3.4e-70 270.4 583 31.0
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 7.6e-70 269.2 583 32.8
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 6.4e-69 266.2 574 32.8
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 5.4e-68 263.1 579 33.0
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.4e-68 263.1 586 32.3
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.4e-68 263.1 584 32.2
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.0e-66 258.8 578 31.8
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.1e-63 248.8 574 32.1
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.6e-62 244.2 587 32.2
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.1e-60 238.8 594 31.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.5e-57 227.6 576 30.4
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.5e-57 227.6 574 30.3
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.3e-57 227.3 443 33.6
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-56 225.3 576 30.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.3e-56 225.3 576 30.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.3e-56 225.3 576 30.4
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 6.2e-56 223.0 458 34.1
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 9.0e-55 219.2 613 29.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 9.0e-55 219.2 588 29.8
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 7.6e-54 216.1 560 29.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-53 215.3 536 31.7
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.3e-53 215.3 443 35.0
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.7e-53 214.9 604 27.8
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 4.2e-52 210.3 316 38.6
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.3e-50 204.5 609 27.6
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 6.7e-50 203.0 575 29.6
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.4e-47 195.3 217 45.6
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 5.3e-47 193.4 298 37.6
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 7.6e-46 189.5 243 40.7
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 7.9e-43 179.5 372 34.9
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.9e-42 177.2 98 85.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.9e-41 174.9 575 27.0
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 9.6e-41 172.6 347 35.2
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-40 171.4 243 38.7
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 4.5e-38 163.7 305 31.8
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 5.8e-38 163.3 354 31.9
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.9e-37 161.0 297 33.3
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.5e-30 137.1 68 98.5
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.4e-28 132.1 260 34.6
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 5.0e-21 107.1 269 29.7
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 2.6e-17 94.7 207 30.0
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 3.3e-17 94.4 236 32.6
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 4.8e-16 90.5 330 28.2
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 1.3e-13 82.4 289 24.6
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.1e-11 75.1 129 38.8
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-11 75.1 150 28.0
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 6.3e-08 63.5 236 27.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.0e-06 58.5 69 39.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.5e-06 57.8 105 34.3


User provided reference genes

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