Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 0.0e+00 1225.7 618 100.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 8.2e-290 1000.0 609 81.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.1e-289 997.7 558 87.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 6.5e-287 990.3 587 82.5
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 6.5e-287 990.3 592 82.9
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.4e-286 989.2 582 82.8
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.5e-286 987.3 616 79.7
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 7.2e-286 986.9 558 85.3
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 9.4e-286 986.5 604 81.8
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 9.4e-286 986.5 557 86.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.2e-285 986.1 618 80.1
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.6e-285 985.7 595 82.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.6e-285 984.6 594 82.0
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 7.9e-285 983.4 595 81.8
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.0e-284 983.0 604 82.0
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.4e-284 982.6 604 80.5
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.4e-284 982.6 571 83.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.4e-284 982.6 597 81.4
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.8e-284 982.2 594 81.5
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.3e-284 981.9 616 80.0
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.0e-284 981.5 616 80.0
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 3.9e-284 981.1 594 81.5
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.1e-284 980.7 593 82.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 5.1e-284 980.7 613 79.8
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 5.1e-284 980.7 594 82.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.8e-284 979.9 594 82.5
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 8.8e-284 979.9 597 81.1
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 8.8e-284 979.9 596 80.7
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.5e-283 979.2 604 80.1
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 3.3e-283 978.0 603 80.4
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.4e-283 977.6 594 82.8
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 4.4e-283 977.6 595 82.2
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.7e-283 977.2 607 79.7
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 9.7e-283 976.5 557 85.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-282 975.7 587 81.9
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-282 975.3 596 81.0
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.2e-282 975.3 576 82.1
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 6.3e-282 973.8 591 81.4
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 8.2e-282 973.4 596 80.2
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.1e-281 973.0 588 81.8
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.1e-281 973.0 586 82.4
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.4e-281 972.6 571 83.2
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 2.4e-281 971.8 601 80.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 2.4e-281 971.8 558 85.5
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.1e-281 971.1 576 81.8
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 5.3e-281 970.7 593 81.5
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.3e-281 970.7 583 82.0
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.1e-281 969.9 600 79.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.1e-281 969.9 600 79.7
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 1.2e-280 969.5 609 78.7
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.6e-280 968.4 599 80.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.6e-280 968.4 599 80.8
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 2.6e-280 968.4 601 79.5
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.5e-280 967.6 599 80.8
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 5.9e-280 967.2 589 81.3
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 5.9e-280 967.2 587 81.4
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 7.7e-280 966.8 585 81.4
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 7.7e-280 966.8 565 83.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-279 966.5 602 79.4
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.0e-279 966.5 583 81.1
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.2e-279 965.3 588 81.5
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.9e-279 964.9 601 79.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 3.8e-279 964.5 582 81.8
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 3.8e-279 964.5 594 80.5
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 3.8e-279 964.5 578 81.7
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 6.5e-279 963.8 599 80.8
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.5e-279 963.4 581 81.6
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 8.5e-279 963.4 597 80.1
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.1e-278 963.0 587 80.9
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.4e-278 962.6 593 81.1
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-278 962.2 558 83.7
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-278 962.2 607 78.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.9e-278 962.2 576 82.6
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.5e-278 961.8 607 79.1
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.2e-278 961.1 572 82.5
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 4.2e-278 961.1 590 80.7
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.2e-278 960.3 617 78.1
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 7.2e-278 960.3 575 81.7
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.2e-277 959.5 590 80.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.6e-277 959.1 587 80.6
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.6e-277 959.1 581 82.1
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 2.7e-277 958.4 587 80.6
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 2.7e-277 958.4 587 80.6
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 6.1e-277 957.2 604 79.6
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 6.1e-277 957.2 604 79.6
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 7.9e-277 956.8 628 76.3
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 7.9e-277 956.8 589 80.6
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.4e-276 956.1 581 81.8
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.4e-276 956.1 593 80.4
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.4e-276 956.1 587 80.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 1.4e-276 956.1 576 81.2
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 2.3e-276 955.3 583 81.1
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-276 954.5 587 80.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.9e-276 954.5 608 78.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 3.9e-276 954.5 644 76.7
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.9e-276 954.5 603 79.1
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 6.7e-276 953.7 587 80.4
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 6.7e-276 953.7 587 80.4
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.6e-275 951.8 605 79.5
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.4e-275 951.0 645 75.3
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.4e-275 951.0 617 77.8
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 8.2e-274 946.8 627 76.7
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.6e-272 942.6 601 78.4
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.2e-270 934.9 574 79.6
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.1e-269 932.2 568 80.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.0e-268 929.9 661 72.6
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.4e-268 929.5 527 85.0
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.8e-268 929.1 580 79.0
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.8e-268 929.1 593 76.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 6.7e-268 927.2 601 77.7
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 8.8e-268 926.8 601 76.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 5.7e-267 924.1 578 78.4
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.5e-259 899.4 586 73.9
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-257 893.3 558 78.7
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.2e-256 889.8 584 77.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.5e-256 887.9 535 81.5
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.3e-255 885.6 588 73.8
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.5e-254 882.1 539 80.9
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 6.8e-252 874.0 527 81.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 7.5e-251 870.5 575 76.5
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 9.2e-241 837.0 592 72.5
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 8.9e-236 820.5 564 71.1
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.6e-235 818.9 618 66.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.8e-235 817.8 592 70.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.9e-234 815.5 596 69.5
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.3e-223 780.0 490 79.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.0e-223 778.9 490 79.0
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.2e-218 762.7 514 74.7
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 9.2e-217 757.3 545 67.2
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 6.0e-216 754.6 433 85.0
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 4.7e-213 745.0 448 83.0
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 4.9e-210 734.9 433 82.9
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.4e-210 734.2 490 76.7
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.6e-207 724.5 426 83.3
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.9e-206 723.0 561 62.4
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.4e-203 712.2 429 81.6
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.3e-188 661.8 403 81.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.2e-168 597.4 433 71.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.6e-168 597.0 600 52.2
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.1e-156 557.8 312 87.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 6.1e-144 515.4 384 70.8
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 9.8e-126 454.9 339 72.3
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 4.6e-115 419.5 264 77.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 3.9e-98 363.2 277 64.3
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 1.8e-87 327.8 216 73.1
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 8.7e-74 282.3 154 87.7
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.5e-73 281.6 186 77.4
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.1e-71 273.9 559 32.9
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.1e-67 259.6 150 83.3
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.0e-57 228.0 133 78.9
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.3e-56 225.3 131 82.4
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 2.4e-55 221.1 126 85.7
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.7e-53 214.9 178 65.2
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.1e-52 212.2 117 89.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 4.1e-47 193.7 115 78.3
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 9.1e-47 192.6 141 71.6
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 5.9e-46 189.9 114 77.2
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-44 185.3 105 81.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-44 185.3 141 63.1
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.2e-42 176.8 115 73.0
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.7e-40 171.8 106 82.1
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.8e-40 171.0 128 70.3
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 5.2e-34 150.2 207 44.9
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.2e-32 144.8 129 62.8
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 4.0e-26 124.0 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.2e-26 123.6 61 95.1
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 7.5e-25 119.8 212 38.2
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 6.6e-21 106.7 70 67.1
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 7.2e-20 103.2 56 89.3
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.0e-17 95.1 184 31.5
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.0e-13 80.5 88 54.5
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.3e-10 71.6 67 50.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 5.2e-10 70.5 78 56.4


User provided reference genes

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