Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 1.5e-183 646.0 309 100.0
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 4.8e-113 411.8 224 82.6
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.1e-112 410.6 224 84.4
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 2.4e-112 409.5 224 82.6
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.4e-112 409.5 224 84.8
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 3.1e-112 409.1 224 82.6
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 3.1e-112 409.1 224 83.0
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 5.3e-112 408.3 224 83.0
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 5.3e-112 408.3 224 82.1
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.5e-111 406.8 224 83.5
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.5e-111 406.8 224 83.5
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 3.4e-111 405.6 224 82.1
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 5.8e-111 404.8 224 83.0
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 1.7e-110 403.3 224 82.1
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 1.7e-110 403.3 224 81.7
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 4.9e-110 401.7 224 81.7
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.9e-109 399.8 224 81.2
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 2.4e-109 399.4 224 80.4
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 5.4e-109 398.3 224 81.2
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 5.4e-109 398.3 222 82.0
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 7.1e-109 397.9 224 80.4
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 7.1e-109 397.9 224 80.8
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 7.1e-109 397.9 224 80.8
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 9.3e-109 397.5 224 81.2
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.2e-108 397.1 224 81.7
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.1e-108 396.4 224 80.4
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.1e-108 396.4 224 80.4
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 2.7e-108 396.0 224 79.9
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 2.7e-108 396.0 224 80.8
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 3.5e-108 395.6 224 81.2
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 3.5e-108 395.6 224 80.4
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.0e-107 394.0 224 81.2
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.3e-107 393.7 224 80.8
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.3e-107 393.7 224 80.4
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.8e-107 393.3 224 79.5
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.1e-106 390.6 224 80.8
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.5e-106 390.2 224 79.0
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.3e-106 389.0 245 75.1
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.6e-105 386.7 229 78.6
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 2.8e-105 386.0 224 78.6
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.7e-105 385.6 224 78.1
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.7e-105 385.6 224 78.1
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 4.8e-105 385.2 224 77.7
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 4.8e-105 385.2 227 77.1
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.2e-105 384.8 224 78.1
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 8.1e-105 384.4 224 78.1
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 8.1e-105 384.4 227 78.9
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 8.1e-105 384.4 224 79.0
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.1e-104 384.0 224 79.0
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.4e-104 383.6 224 77.7
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 2.4e-104 382.9 224 78.6
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 4.0e-104 382.1 224 77.2
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 6.9e-104 381.3 224 77.7
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 6.9e-104 381.3 224 77.7
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 2.0e-103 379.8 224 76.8
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 2.0e-103 379.8 224 76.8
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 2.0e-103 379.8 224 76.8
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 2.6e-103 379.4 224 76.3
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 3.4e-103 379.0 224 76.3
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 3.4e-103 379.0 224 76.3
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 3.4e-103 379.0 224 76.3
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.4e-103 379.0 224 77.7
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.5e-103 378.6 224 78.1
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.5e-103 378.6 224 78.1
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 5.8e-103 378.3 234 77.4
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.9e-102 375.9 226 76.5
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 2.9e-102 375.9 263 68.1
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 8.4e-102 374.4 224 75.4
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 9.3e-101 370.9 220 75.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 4.6e-100 368.6 202 82.7
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-99 367.1 234 72.6
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.3e-99 367.1 234 70.5
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 2.3e-99 366.3 220 75.5
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 3.0e-99 365.9 220 73.2
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 5.1e-99 365.2 203 81.8
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.5e-98 363.6 230 73.9
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 1.5e-98 363.6 224 75.4
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.4e-96 357.1 240 70.4
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.5e-95 353.6 204 79.4
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 4.5e-95 352.1 191 86.4
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.7e-92 342.8 215 76.3
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 6.7e-91 338.2 190 82.6
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 7.4e-90 334.7 190 81.6
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.3e-89 334.0 190 80.5
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 4.8e-89 332.0 191 80.1
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 4.8e-89 332.0 190 80.5
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 8.2e-89 331.3 190 79.5
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.4e-88 330.5 256 61.7
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 1.4e-88 330.5 196 80.1
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 1.4e-88 330.5 190 80.0
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.8e-88 330.1 224 68.8
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 4.1e-88 328.9 190 78.9
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.2e-87 327.4 190 81.1
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.2e-87 327.4 175 85.1
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.2e-87 327.4 190 78.9
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.5e-87 327.0 225 64.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.5e-87 327.0 193 77.2
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 3.4e-87 325.9 199 76.9
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 3.4e-87 325.9 190 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 7.7e-87 324.7 224 64.7
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 7.7e-87 324.7 190 77.9
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.0e-86 324.3 190 78.4
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.7e-86 323.6 190 78.4
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 2.2e-86 323.2 190 78.4
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 2.2e-86 323.2 189 77.8
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.8e-86 322.4 189 78.3
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.1e-85 320.9 190 78.4
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.9e-85 320.1 190 77.4
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 3.2e-85 319.3 179 82.7
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.1e-84 316.6 221 63.3
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 6.7e-83 311.6 190 74.7
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 6.7e-83 311.6 190 74.7
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 2.2e-81 306.6 175 80.0
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 5.3e-80 302.0 169 81.7
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 5.3e-80 302.0 175 77.1
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.6e-79 299.7 221 60.2
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.7e-79 298.1 183 75.4
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.0e-75 286.2 220 57.7
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.0e-74 283.5 224 61.6
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.1e-72 275.8 156 79.5
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 7.0e-72 275.0 220 55.9
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.1e-68 263.5 144 81.2
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.1e-68 261.9 226 57.5
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 2.5e-61 240.0 216 55.6
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 1.8e-59 233.8 157 71.3
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.0e-55 220.3 143 74.8
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 7.7e-55 218.4 191 57.6
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 4.7e-52 209.1 311 38.3
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.7e-49 199.5 216 43.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 4.5e-47 192.6 105 83.8
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.1e-44 183.7 130 71.5
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.9e-32 144.1 196 39.3
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 6.0e-31 139.0 84 76.2
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.1e-29 134.8 193 42.5
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 4.7e-28 129.4 75 80.0
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 2.7e-23 113.6 146 43.8
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.8e-20 103.6 66 71.2
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 2.0e-18 97.4 57 80.7
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.7e-17 94.4 43 95.3
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.1e-13 81.6 135 36.3
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 4.3e-13 79.7 77 53.2
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 2.4e-11 73.9 48 75.0
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.9e-09 67.0 36 77.8
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 5.4e-08 62.8 31 77.4
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 7.1e-08 62.4 33 72.7
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 3.5e-07 60.1 37 64.9


User provided reference genes

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