Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.0e-122 441.4 221 100.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.7e-41 172.9 175 61.1
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 3.8e-40 169.1 163 58.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 8.6e-40 167.9 159 58.5
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 9.5e-39 164.5 159 58.5
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.8e-38 162.9 177 55.9
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 4.0e-37 159.1 162 53.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.2e-37 158.7 163 55.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 2.6e-36 156.4 160 55.0
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.4e-36 156.0 160 55.0
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.7e-35 153.7 159 56.6
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-35 153.7 144 57.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-35 153.7 144 57.6
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.7e-35 153.7 165 51.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.7e-35 153.7 139 60.4
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.2e-35 153.3 133 63.2
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.2e-35 153.3 159 52.8
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 4.9e-35 152.1 103 73.8
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.4e-35 151.8 159 52.2
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 8.3e-35 151.4 162 52.5
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 8.3e-35 151.4 160 53.8
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.1e-34 151.0 162 51.2
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.1e-34 151.0 162 54.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.1e-34 151.0 159 52.8
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.4e-34 150.6 162 51.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.4e-34 150.6 160 54.4
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.4e-34 150.6 162 52.5
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-34 150.2 162 51.9
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-34 150.2 162 51.9
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.8e-34 150.2 162 51.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.8e-34 150.2 162 51.9
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.8e-34 150.2 113 67.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.8e-34 150.2 137 58.4
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.4e-34 149.8 113 67.3
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.4e-34 149.8 139 56.1
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.4e-34 149.8 113 68.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.4e-34 149.8 139 60.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 2.4e-34 149.8 139 56.8
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.2e-34 149.4 162 51.9
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 3.2e-34 149.4 159 54.7
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.1e-34 149.1 113 67.3
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 4.1e-34 149.1 160 52.5
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 4.1e-34 149.1 159 52.2
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 4.1e-34 149.1 159 52.2
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 5.4e-34 148.7 163 50.9
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 5.4e-34 148.7 163 50.9
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 5.4e-34 148.7 161 50.9
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 7.0e-34 148.3 160 52.5
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 7.0e-34 148.3 162 51.9
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 7.0e-34 148.3 159 50.9
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 7.0e-34 148.3 162 51.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 9.2e-34 147.9 141 58.2
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.2e-33 147.5 113 67.3
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-33 147.5 101 72.3
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-33 147.1 135 59.3
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.6e-33 147.1 115 64.3
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.6e-33 147.1 102 69.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-33 146.7 120 63.3
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.0e-33 146.7 100 71.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.0e-33 146.7 113 65.5
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.0e-33 146.7 159 51.6
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.5e-33 146.0 102 69.6
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 3.5e-33 146.0 107 66.4
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 3.5e-33 146.0 113 62.8
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 4.6e-33 145.6 159 51.6
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 4.6e-33 145.6 158 52.5
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 5.9e-33 145.2 120 61.7
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.9e-33 145.2 138 55.8
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.9e-33 145.2 155 51.6
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 5.9e-33 145.2 164 51.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 7.8e-33 144.8 120 61.7
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 7.8e-33 144.8 120 61.7
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 7.8e-33 144.8 135 59.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 7.8e-33 144.8 102 67.6
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 7.8e-33 144.8 101 68.3
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 7.8e-33 144.8 160 50.6
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.0e-32 144.4 163 50.9
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.0e-32 144.4 160 51.9
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.0e-32 144.4 155 51.6
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.0e-32 144.4 92 73.9
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.3e-32 144.1 114 62.3
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.3e-32 144.1 114 62.3
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.3e-32 144.1 113 64.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.3e-32 144.1 140 57.9
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.3e-32 144.1 141 56.7
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.7e-32 143.7 159 52.2
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.3e-32 143.3 102 67.6
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.0e-32 142.9 102 66.7
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.0e-32 142.9 159 52.2
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 3.0e-32 142.9 102 67.6
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.0e-32 142.9 102 67.6
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.9e-32 142.5 166 50.6
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 5.0e-32 142.1 160 48.8
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 5.0e-32 142.1 138 55.8
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.6e-32 141.7 159 49.7
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.6e-32 141.7 159 49.7
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 6.6e-32 141.7 132 58.3
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 6.6e-32 141.7 155 51.6
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 8.6e-32 141.4 92 72.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.1e-31 141.0 92 72.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.1e-31 141.0 159 49.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.1e-31 141.0 110 66.4
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.1e-31 141.0 116 61.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.5e-31 140.6 103 68.0
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.5e-31 140.6 135 57.8
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.9e-31 140.2 102 64.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.5e-31 139.8 159 49.1
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.5e-31 139.8 159 51.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.3e-31 139.4 132 56.8
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 5.6e-31 138.7 100 64.0
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.6e-31 138.7 120 59.2
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 7.3e-31 138.3 163 47.9
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 7.3e-31 138.3 94 69.1
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 7.3e-31 138.3 152 53.9
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 7.3e-31 138.3 165 48.5
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 7.3e-31 138.3 92 71.7
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.6e-30 137.1 155 50.3
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.6e-30 137.1 102 64.7
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.6e-30 137.1 106 66.0
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.1e-30 136.7 188 47.9
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-30 135.6 112 62.5
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 6.2e-30 135.2 102 64.7
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.0e-30 134.8 160 47.5
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.0e-29 134.4 136 53.7
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.0e-29 134.4 140 51.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.3e-29 133.3 164 47.6
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 3.1e-29 132.9 97 66.0
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 4.0e-29 132.5 112 61.6
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 4.0e-29 132.5 92 66.3
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 5.2e-29 132.1 135 55.6
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-28 131.0 112 59.8
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.2e-28 131.0 112 59.8
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-28 131.0 155 46.5
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.2e-28 131.0 159 48.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-28 130.6 112 59.8
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.6e-28 129.8 118 56.8
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.4e-28 129.4 102 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 9.8e-28 127.9 92 68.5
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.3e-27 127.5 103 59.2
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.7e-27 125.9 110 59.1
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 6.4e-27 125.2 158 44.9
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.3e-27 124.8 102 58.8
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.1e-26 124.4 127 55.1
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.4e-26 124.0 102 56.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 5.4e-26 122.1 135 48.9
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 7.0e-26 121.7 101 58.4
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 7.0e-26 121.7 94 64.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 4.6e-25 119.0 109 54.1
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 6.0e-25 118.6 97 60.8
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.0e-25 118.6 92 62.0
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 6.6e-24 115.2 168 41.7
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 2.5e-23 113.2 76 68.4
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 4.7e-22 109.0 117 48.7
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 6.2e-22 108.6 110 56.4
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 8.1e-22 108.2 149 42.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.3e-21 106.7 122 49.2
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.2e-20 104.4 116 49.1
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.2e-20 104.4 142 45.8
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 8.3e-19 98.2 159 39.6
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 6.6e-16 88.6 119 45.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 6.8e-13 78.6 123 41.5
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.2e-12 77.8 123 41.5
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.5e-12 77.4 54 64.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.0e-12 77.0 75 48.0
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.6e-12 76.6 57 61.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.9e-11 73.2 97 41.2
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 2.9e-11 73.2 52 59.6
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.4e-11 72.0 52 57.7
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.0e-08 64.7 37 83.8
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.5e-07 60.8 75 46.7
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 4.3e-07 59.3 92 37.0
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.2e-06 57.8 55 58.2
Cfa023258 Carpinus fangiana HOM05D003917 ORTHO05D126232 1.6e-06 57.4 106 30.2
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.6e-06 57.4 37 73.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.8e-06 56.6 52 57.7
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.6e-06 56.2 52 57.7
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.2e-06 55.5 37 70.3


User provided reference genes

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