Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.0e-41 170.2 90 100.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-24 116.3 87 78.2
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.0e-23 111.7 87 72.4
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.0e-23 111.7 87 74.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 5.1e-23 110.9 87 71.3
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 6.6e-23 110.5 87 71.3
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 8.6e-23 110.2 87 71.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.1e-22 109.8 87 71.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.5e-22 109.4 87 72.4
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.9e-22 109.0 87 71.3
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.5e-22 108.6 88 70.5
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.5e-22 108.6 87 70.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-22 108.6 87 70.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-22 108.6 87 70.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.5e-22 108.6 87 70.1
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.5e-22 108.6 87 70.1
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.3e-22 108.2 87 71.3
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.3e-22 108.2 87 71.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 3.3e-22 108.2 87 70.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.3e-22 108.2 87 71.3
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.3e-22 107.8 87 70.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 4.3e-22 107.8 87 70.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 4.3e-22 107.8 87 70.1
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 4.3e-22 107.8 87 69.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 4.3e-22 107.8 87 70.1
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 4.3e-22 107.8 87 70.1
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 69.0
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 70.1
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 70.1
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 70.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 70.1
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 70.1
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.6e-22 107.5 87 70.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 7.3e-22 107.1 87 70.1
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 7.3e-22 107.1 87 71.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.3e-22 107.1 87 69.0
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 70.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 70.1
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 70.1
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 70.1
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 70.1
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 70.1
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 9.5e-22 106.7 87 71.3
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 70.1
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 70.1
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 70.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 70.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 67.8
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 67.8
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 70.1
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.2e-21 106.3 87 69.0
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.6e-21 105.9 87 69.0
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 70.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.6e-21 105.9 87 69.0
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.1e-21 105.5 87 70.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.1e-21 105.5 87 69.0
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.1e-21 105.5 87 69.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.8e-21 105.1 87 67.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.8e-21 105.1 87 70.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.8e-21 105.1 87 69.0
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 2.8e-21 105.1 87 67.8
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.8e-21 105.1 86 70.9
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 2.8e-21 105.1 87 70.1
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 69.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 69.0
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 67.8
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 69.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 69.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 67.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.6e-21 104.8 87 67.8
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 67.8
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 67.8
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 69.0
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 67.8
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 69.0
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 67.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 4.7e-21 104.4 87 67.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 6.2e-21 104.0 87 67.8
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 6.2e-21 104.0 87 67.8
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 8.1e-21 103.6 87 67.8
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 8.1e-21 103.6 87 67.8
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-20 103.2 87 66.7
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.1e-20 103.2 87 66.7
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.1e-20 103.2 87 67.8
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 4.0e-20 101.3 87 70.1
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 6.8e-20 100.5 87 66.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 6.8e-20 100.5 86 66.3
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.3e-18 96.3 86 64.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.7e-18 95.9 88 61.4
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 2.2e-18 95.5 82 65.9
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 6.4e-18 94.0 87 62.1
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.4e-18 93.6 87 65.5
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.4e-17 92.0 75 69.3
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.4e-17 92.0 87 58.6
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.2e-17 91.7 77 68.8
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 5.4e-17 90.9 87 64.4
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 5.1e-15 84.3 69 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.5e-14 82.0 82 56.1
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 4.3e-14 81.3 71 67.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 9.6e-14 80.1 72 62.5
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.2e-13 79.7 88 53.4
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.1e-13 79.0 87 57.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.4e-12 76.3 88 52.3
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.8e-12 75.9 82 52.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 6.9e-12 73.9 82 51.2
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 9.0e-12 73.6 82 53.7
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 4.4e-11 71.2 86 47.7
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.8e-11 70.9 86 50.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.3e-10 69.7 82 50.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.9e-10 68.6 86 48.8
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 6.4e-10 67.4 84 47.6
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.1e-09 66.6 83 50.6
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-07 58.9 83 44.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 5.1e-07 57.8 51 66.7


User provided reference genes

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