Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G251 Amborella trichopoda HOM05D000809 ORTHO05D001196 1.6e-52 209.1 106 100.0
ATR1120G181 Amborella trichopoda HOM05D000809 ORTHO05D001196 1.5e-29 132.9 87 81.6
Atru.chr7.1305 Acer truncatum HOM05D000809 ORTHO05D001196 1.1e-11 73.6 99 48.5
TWI63G0537 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 2.3e-11 72.4 72 56.9
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 4.0e-11 71.6 71 56.3
Potri.006G158676 Populus trichocarpa HOM05D000809 ORTHO05D001196 5.2e-11 71.2 81 49.4
Potri.018G076500 Populus trichocarpa HOM05D000809 ORTHO05D001196 5.2e-11 71.2 71 53.5
Sabra18G0064700 Salix brachista HOM05D000809 ORTHO05D001196 5.2e-11 71.2 71 53.5
Ciclev10007575m.g Citrus clementina HOM05D000809 ORTHO05D001196 6.8e-11 70.9 83 47.0
Thecc.09G114000 Theobroma cacao HOM05D000809 ORTHO05D001196 6.8e-11 70.9 75 56.0
QL02p085950 Quercus lobata HOM05D000809 ORTHO05D001196 8.9e-11 70.5 74 52.7
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 1.2e-10 70.1 75 54.7
Duzib168G1951 Durio zibethinus HOM05D000809 ORTHO05D001196 1.2e-10 70.1 93 49.5
Gohir.D05G023000 Gossypium hirsutum HOM05D000809 ORTHO05D001196 1.2e-10 70.1 75 56.0
Gorai.009G023200 Gossypium raimondii HOM05D000809 ORTHO05D001196 1.2e-10 70.1 75 56.0
MBI01_g16645_MAGBIO Magnolia biondii HOM05D000809 ORTHO05D001196 1.2e-10 70.1 74 55.4
Nn2g11809 Nelumbo nucifera HOM05D000809 ORTHO05D001196 1.2e-10 70.1 71 57.7
Manes.03G068900 Manihot esculenta HOM05D000809 ORTHO05D001196 3.4e-10 68.6 90 47.8
TWI32G1189 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 4.4e-10 68.2 72 54.2
Gohir.A05G021500 Gossypium hirsutum HOM05D000809 ORTHO05D001196 7.6e-10 67.4 75 54.7
Nn8g39256 Nelumbo nucifera HOM05D000809 ORTHO05D001196 1.3e-09 66.6 76 52.6
Manes.16G070600 Manihot esculenta HOM05D000809 ORTHO05D001196 1.7e-09 66.2 81 46.9
Dinv36607 Davidia involucrata HOM05D000809 ORTHO05D001196 2.9e-09 65.5 72 56.9
CANSAT56G3555 Cannabis sativa HOM05D000809 ORTHO05D001196 3.8e-09 65.1 98 44.9
PSO063G0277 Papaver somniferum HOM05D000809 ORTHO05D001196 3.8e-09 65.1 72 52.8
HPP92_023152 Vanilla planifolia HOM05D000809 ORTHO05D001196 6.4e-09 64.3 75 48.0
Duzib187G1915 Durio zibethinus HOM05D000809 ORTHO05D001196 1.1e-08 63.5 72 50.0
Cc06_g09390 Coffea canephora HOM05D000809 ORTHO05D001196 1.4e-08 63.2 71 52.1
RcHm_v2.0_Chr2g0091001 Rosa chinensis HOM05D000809 ORTHO05D001196 1.4e-08 63.2 70 48.6
TAR636G2401 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.9e-08 62.8 72 54.2
VMungo0251G3045 Vigna mungo HOM05D000809 ORTHO05D001196 1.9e-08 62.8 74 51.4
Cfa003286 Carpinus fangiana HOM05D000809 ORTHO05D001196 3.2e-08 62.0 88 45.5
PSO782G3528 Papaver somniferum HOM05D000809 ORTHO05D001196 3.2e-08 62.0 72 51.4
Phvul.002G314700 Phaseolus vulgaris HOM05D000809 ORTHO05D001196 4.1e-08 61.6 73 49.3
EL10Ac8g18527 Beta vulgaris HOM05D000809 ORTHO05D001196 5.4e-08 61.2 110 40.9
Dinv41580 Davidia involucrata HOM05D000809 ORTHO05D001196 5.4e-08 61.2 96 44.8
Psat1g039600 Pisum sativum HOM05D000809 ORTHO05D001196 5.4e-08 61.2 71 49.3
Lj2g0007105 Lotus japonicus HOM05D000809 ORTHO05D001196 7.1e-08 60.8 71 52.1
arahy.Tifrunner.gnm1.ann1.H7I9KA Arachis hypogaea HOM05D000809 ORTHO05D001196 9.2e-08 60.5 71 47.9
arahy.Tifrunner.gnm1.ann1.XGCT1R Arachis hypogaea HOM05D000809 ORTHO05D001196 9.2e-08 60.5 71 47.9
FvH4_1g05280 Fragaria vesca HOM05D000809 ORTHO05D001196 9.2e-08 60.5 72 48.6
FAN19G0208 Fragaria x ananassa HOM05D000809 ORTHO05D001196 9.2e-08 60.5 72 48.6
MSTRG.17164 Avicennia marina HOM05D000809 ORTHO05D001196 1.2e-07 60.1 71 47.9
CiPaw.04G166800 Carya illinoinensis HOM05D000809 ORTHO05D001196 1.2e-07 60.1 88 45.5
Lalb_Chr16g0387981 Lupinus albus HOM05D000809 ORTHO05D001196 1.6e-07 59.7 71 49.3
MD15G1189100 Malus domestica HOM05D000809 ORTHO05D001196 1.6e-07 59.7 75 49.3
Actinidia20341 Actinidia chinensis HOM05D000809 ORTHO05D001196 2.1e-07 59.3 76 50.0
Lalb_Chr09g0331131 Lupinus albus HOM05D000809 ORTHO05D001196 2.1e-07 59.3 71 50.7
Sc18g0001070 Simmondsia chinensis HOM05D000809 ORTHO05D001196 2.1e-07 59.3 76 46.1
TWI34G1328 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 2.1e-07 59.3 72 50.0
MSTRG.4909 Avicennia marina HOM05D000809 ORTHO05D001196 2.7e-07 58.9 71 50.7
CSS0031088 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D001196 2.7e-07 58.9 75 48.0
Lj7C645G8 Lonicera japonica HOM05D000809 ORTHO05D001196 2.7e-07 58.9 71 52.1
VMungo0251G2750 Vigna mungo HOM05D000809 ORTHO05D001196 3.5e-07 58.5 70 50.0
CDE06G1916 Ceratophyllum demersum HOM05D000809 ORTHO05D001196 4.6e-07 58.2 92 43.5
Ca_25515_v3 Cicer arietinum L. HOM05D000809 ORTHO05D001196 4.6e-07 58.2 71 49.3
Glyma.09G188000 Glycine max HOM05D000809 ORTHO05D001196 4.6e-07 58.2 108 38.0
Medtr6g085190 Medicago truncatula HOM05D000809 ORTHO05D001196 4.6e-07 58.2 71 49.3
Glyma.05G232400 Glycine max HOM05D000809 ORTHO05D001196 6.0e-07 57.8 101 41.6
MSTRG.28182 Avicennia marina HOM05D000809 ORTHO05D001196 7.8e-07 57.4 70 48.6
Lalb_Chr14g0371351 Lupinus albus HOM05D000809 ORTHO05D001196 7.8e-07 57.4 71 50.7
Lalb_Chr24g0397651 Lupinus albus HOM05D000809 ORTHO05D001196 7.8e-07 57.4 105 36.2
FAN23G0415 Fragaria x ananassa HOM05D000809 ORTHO05D001196 1.0e-06 57.0 72 47.2
FAN26G0422 Fragaria x ananassa HOM05D000809 ORTHO05D007733 1.0e-06 57.0 72 47.2
FAN28G1747 Fragaria x ananassa HOM05D000809 ORTHO05D001196 1.0e-06 57.0 72 47.2
Eucgr.C01072 Eucalyptus grandis HOM05D000809 ORTHO05D001196 1.3e-06 56.6 70 50.0
Hund09190 Selenicereus undatus HOM05D000809 ORTHO05D001196 1.3e-06 56.6 71 50.7
VMungo0464G1738 Vigna mungo HOM05D000809 ORTHO05D001196 1.3e-06 56.6 71 49.3
Ah.14g081540 Amaranthus hybridus HOM05D000809 ORTHO05D001196 1.7e-06 56.2 73 47.9
Aqoxy7G01821 Aquilegia oxysepala HOM05D000809 ORTHO05D001196 1.7e-06 56.2 74 43.2
arahy.Tifrunner.gnm1.ann1.JA81W4 Arachis hypogaea HOM05D000809 ORTHO05D001196 1.7e-06 56.2 98 40.8
MD02G1056200 Malus domestica HOM05D000809 ORTHO05D001196 1.7e-06 56.2 70 50.0
Sed0018696 Sechium edule HOM05D000809 ORTHO05D001196 1.7e-06 56.2 72 47.2
Lalb_Chr05g0222661 Lupinus albus HOM05D000809 ORTHO05D001196 2.3e-06 55.8 71 50.7
vmacro20665 Vaccinium macrocarpon HOM05D000809 ORTHO05D001196 2.3e-06 55.8 75 44.0
ClCG11G002600 Citrullus lanatus HOM05D000809 ORTHO05D001196 3.0e-06 55.5 75 46.7
Glyma.08G039800 Glycine max HOM05D000809 ORTHO05D001196 3.0e-06 55.5 72 47.2
Hund26130 Selenicereus undatus HOM05D000809 ORTHO05D001196 3.0e-06 55.5 75 48.0
AUR62011018 Chenopodium quinoa HOM05D000809 ORTHO05D001196 3.9e-06 55.1 95 40.0
Peaxi162Scf00560g00515 Petunia axillaris HOM05D000809 ORTHO05D001196 3.9e-06 55.1 72 47.2
Phvul.004G161100 Phaseolus vulgaris HOM05D000809 ORTHO05D001196 3.9e-06 55.1 108 37.0
Actinidia32692 Actinidia chinensis HOM05D000809 ORTHO05D001196 5.1e-06 54.7 76 46.1
arahy.Tifrunner.gnm1.ann1.KX0H5E Arachis hypogaea HOM05D000809 ORTHO05D001196 5.1e-06 54.7 98 40.8
TPR.G31454 Trifolium pratense HOM05D000809 ORTHO05D001196 6.6e-06 54.3 73 52.1
CSS0027452 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D001196 8.6e-06 53.9 71 49.3
Nitab4.5_0002038g0030 Nicotiana tabacum HOM05D000809 ORTHO05D001196 8.6e-06 53.9 72 48.6
Nitab4.5_0002512g0050 Nicotiana tabacum HOM05D000809 ORTHO05D001196 8.6e-06 53.9 72 48.6


User provided reference genes

Program Settings