Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 1.8e-162 575.9 290 100.0
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 6.0e-142 507.7 290 84.5
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 4.7e-139 498.0 290 83.4
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.4e-138 496.5 290 82.8
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 4.0e-138 495.0 290 82.4
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.4e-137 491.9 290 82.4
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.7e-136 489.6 290 82.4
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 3.8e-136 488.4 286 82.5
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 6.4e-136 487.6 290 81.4
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.1e-135 486.9 290 81.4
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.4e-135 486.5 287 82.2
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 2.4e-135 485.7 289 80.6
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 3.2e-135 485.3 290 80.3
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 7.1e-135 484.2 289 80.3
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 9.3e-135 483.8 288 80.6
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 9.3e-135 483.8 290 81.7
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.2e-134 483.4 289 80.6
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.6e-134 483.0 290 80.0
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.5e-134 481.9 288 79.9
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.0e-133 480.3 290 79.7
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 3.0e-133 478.8 289 79.2
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 6.6e-133 477.6 289 78.5
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 6.6e-133 477.6 290 79.0
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 8.7e-133 477.2 289 78.9
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.9e-132 476.1 290 79.0
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.5e-132 475.7 289 80.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 2.5e-132 475.7 284 80.6
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.5e-132 475.7 302 78.1
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.3e-132 475.3 290 80.0
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 7.3e-132 474.2 289 79.6
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 7.3e-132 474.2 288 79.5
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 7.3e-132 474.2 286 79.7
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 7.3e-132 474.2 286 79.7
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 9.6e-132 473.8 287 79.8
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.3e-131 473.4 289 78.9
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 1.3e-131 473.4 291 79.0
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.3e-131 473.4 289 78.9
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.6e-131 473.0 289 78.9
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.6e-131 473.0 290 78.3
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.1e-131 472.6 286 80.1
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 3.6e-131 471.9 289 78.5
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.6e-131 471.9 289 79.6
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 6.2e-131 471.1 290 77.9
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 6.2e-131 471.1 290 79.3
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 8.1e-131 470.7 284 79.6
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.1e-130 470.3 289 77.2
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.1e-130 470.3 285 80.0
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 1.4e-130 469.9 289 77.9
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.4e-130 469.9 291 78.4
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.4e-130 469.2 290 79.3
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 3.1e-130 468.8 289 78.9
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.1e-130 468.8 289 76.8
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.0e-130 468.4 289 77.2
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 4.0e-130 468.4 289 78.5
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.9e-130 467.6 290 76.2
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 6.9e-130 467.6 289 77.2
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 6.9e-130 467.6 289 77.2
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 6.9e-130 467.6 289 77.2
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 9.0e-130 467.2 290 77.2
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 9.0e-130 467.2 290 77.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.2e-129 466.8 290 76.2
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.2e-129 466.8 289 78.5
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.2e-129 466.8 290 76.6
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.5e-129 466.5 289 76.1
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 1.5e-129 466.5 290 76.2
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.5e-129 466.5 289 76.5
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.5e-129 466.5 289 78.2
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.5e-129 466.5 290 77.9
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 2.0e-129 466.1 289 77.2
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 77.2
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 5.8e-129 464.5 289 77.2
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 5.8e-129 464.5 288 79.5
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 9.9e-129 463.8 289 77.9
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 4.9e-128 461.5 289 76.1
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 6.4e-128 461.1 290 76.9
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 8.4e-128 460.7 287 77.7
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 1.1e-127 460.3 289 76.1
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.4e-127 459.9 289 75.8
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.4e-127 459.9 289 77.2
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.4e-127 459.1 289 75.8
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.2e-127 458.8 291 77.3
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 4.2e-127 458.4 290 76.2
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 4.2e-127 458.4 293 78.5
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 9.3e-127 457.2 289 75.1
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 9.3e-127 457.2 289 75.4
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 9.3e-127 457.2 289 75.1
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.2e-126 456.8 288 76.4
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.6e-126 456.4 289 75.8
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 2.7e-126 455.7 289 74.7
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 3.5e-126 455.3 289 75.8
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 3.5e-126 455.3 289 76.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 4.6e-126 454.9 289 74.4
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 4.6e-126 454.9 287 76.0
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 4.6e-126 454.9 290 76.6
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.0e-125 453.8 307 74.9
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.0e-125 453.8 322 71.4
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.3e-125 453.4 289 74.7
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.7e-125 453.0 289 74.7
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.3e-125 452.6 289 73.7
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.3e-125 452.6 289 73.7
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.3e-125 452.6 289 73.7
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.3e-125 452.6 288 76.0
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 3.9e-125 451.8 289 73.7
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 3.9e-125 451.8 289 73.7
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 6.6e-125 451.1 306 75.2
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 6.6e-125 451.1 290 75.5
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 8.7e-125 450.7 287 76.0
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.5e-124 449.9 287 74.9
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 3.3e-124 448.7 286 75.9
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 4.3e-124 448.4 301 75.1
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 1.6e-123 446.4 290 74.8
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 2.8e-123 445.7 291 75.6
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 8.1e-123 444.1 293 75.1
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 2.4e-122 442.6 287 73.5
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 6.9e-122 441.0 293 74.7
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 7.6e-121 437.6 270 78.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 8.4e-120 434.1 292 72.3
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 1.4e-119 433.3 303 71.3
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.4e-119 432.6 261 82.0
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 7.9e-118 427.6 290 71.4
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.8e-117 426.4 292 75.3
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 6.7e-117 424.5 290 72.8
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.5e-116 423.3 289 72.3
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.9e-116 422.9 448 53.6
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.9e-116 422.9 286 72.7
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.6e-115 419.9 289 70.2
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 4.8e-115 418.3 299 71.9
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 4.0e-114 415.2 291 70.1
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.3e-114 414.8 291 69.8
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.2e-113 413.7 291 69.4
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 2.9e-112 409.1 290 69.7
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.9e-111 406.4 307 66.8
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 3.2e-111 405.6 232 83.6
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 1.6e-110 403.3 256 75.4
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.0e-109 400.6 290 66.6
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 2.3e-109 399.4 283 66.8
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.0e-109 399.1 287 66.2
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.3e-108 395.6 290 64.8
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 7.4e-108 394.4 254 75.6
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 4.8e-107 391.7 293 65.9
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.4e-105 385.6 230 80.0
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 5.9e-105 384.8 291 66.3
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 1.3e-99 367.1 232 75.9
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 5.3e-98 361.7 285 62.8
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.1e-95 354.0 298 63.1
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.9e-88 329.3 282 59.9
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.1e-86 323.2 202 80.2
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.2e-79 299.3 270 60.0
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 3.7e-75 285.8 287 50.2
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.0e-73 280.0 284 51.1
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 2.7e-73 279.6 285 51.6
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 6.5e-72 275.0 164 81.7
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 6.3e-67 258.5 281 47.0
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 3.8e-56 222.6 151 69.5
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 7.5e-52 208.4 151 68.9
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.7e-51 207.2 113 86.7
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 4.9e-51 205.7 139 74.1
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 7.1e-26 122.1 82 72.0
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 3.5e-25 119.8 94 66.0
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.3e-24 117.1 94 64.9
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.5e-23 113.6 94 63.8
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.1e-22 110.5 130 44.6
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 1.2e-20 104.8 74 70.3
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 2.6e-20 103.6 152 39.5
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 1.7e-19 100.9 81 65.4
Cfa026260 Carpinus fangiana HOM05D004135 ORTHO05D125562 3.8e-19 99.8 304 28.3
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 4.9e-19 99.4 66 72.7
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 2.4e-18 97.1 52 84.6
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 6.6e-16 89.0 70 64.3
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 1.9e-15 87.4 57 73.7
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 4.5e-12 76.3 58 65.5
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 4.5e-12 76.3 58 65.5
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.3e-11 74.7 55 67.3
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 4.2e-10 69.7 61 63.9
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 2.5e-07 60.5 41 61.0
MD08G1091900 Malus domestica HOM05D004135 ORTHO05D246351 9.6e-07 58.5 36 83.3


User provided reference genes

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