Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 3.2e-242 841.3 402 100.0
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 6.1e-177 624.4 348 85.9
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-176 623.2 387 79.3
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.8e-176 622.9 349 85.1
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.8e-176 622.9 347 84.7
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 2.3e-176 622.5 396 77.8
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 3.9e-176 621.7 349 85.4
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 5.1e-176 621.3 395 77.5
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 6.7e-176 620.9 410 75.1
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 4.4e-175 618.2 391 78.5
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.7e-175 617.8 398 76.4
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.2e-174 615.9 344 84.6
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.2e-174 615.9 406 75.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 2.2e-174 615.9 398 76.9
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.8e-174 615.5 398 75.6
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 3.7e-174 615.1 346 84.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.8e-174 614.8 403 77.2
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 4.8e-174 614.8 346 84.7
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 4.8e-174 614.8 349 84.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 6.3e-174 614.4 371 80.1
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 6.3e-174 614.4 401 75.6
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 6.3e-174 614.4 406 75.4
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 6.3e-174 614.4 352 83.2
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.2e-174 614.0 406 75.6
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-173 613.6 406 75.9
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.1e-173 613.6 396 76.5
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.8e-173 612.8 405 74.8
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.4e-173 612.5 406 75.4
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.4e-173 612.5 409 73.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.1e-173 612.1 347 82.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.1e-173 612.1 391 77.2
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.1e-173 612.1 395 76.2
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 4.1e-173 611.7 398 75.6
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 4.1e-173 611.7 346 84.1
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.1e-173 611.7 397 75.8
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 5.3e-173 611.3 344 84.0
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 5.3e-173 611.3 348 83.3
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 9.1e-173 610.5 401 75.3
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.2e-172 610.1 407 74.7
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.6e-172 609.8 394 76.4
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.6e-172 609.8 405 74.6
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.0e-172 609.4 345 83.5
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.0e-172 609.4 402 73.9
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 2.6e-172 609.0 400 75.2
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 2.6e-172 609.0 345 83.5
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.6e-172 609.0 346 83.8
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 3.5e-172 608.6 402 74.9
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 5.9e-172 607.8 347 83.6
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 7.7e-172 607.4 348 83.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.3e-171 606.7 392 75.5
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.7e-171 606.3 389 76.3
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.2e-171 605.9 402 73.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.9e-171 605.5 401 73.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.8e-171 605.1 344 82.8
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 6.5e-171 604.4 363 79.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.1e-170 603.6 369 79.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.5e-170 603.2 367 79.6
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.5e-170 603.2 347 82.7
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.5e-170 602.4 401 75.1
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.5e-170 602.4 401 74.8
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.2e-170 602.1 403 73.4
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 4.2e-170 601.7 363 79.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 4.2e-170 601.7 403 73.4
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 4.2e-170 601.7 344 82.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 4.2e-170 601.7 426 71.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 4.2e-170 601.7 344 81.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 5.5e-170 601.3 396 74.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.5e-170 601.3 391 75.7
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.2e-170 600.9 395 75.2
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 9.4e-170 600.5 404 72.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 9.4e-170 600.5 404 72.0
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-169 600.1 410 73.4
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.6e-169 599.7 388 75.8
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.6e-169 599.7 388 75.8
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.6e-169 599.7 395 75.2
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 2.7e-169 599.0 345 82.3
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 8.0e-169 597.4 410 73.4
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.3e-168 595.9 346 81.8
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 3.0e-168 595.5 396 73.7
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 8.8e-168 594.0 346 81.8
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.5e-167 593.2 346 82.1
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.0e-167 592.8 411 71.0
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.6e-167 592.4 379 78.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 3.3e-167 592.0 398 73.1
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 4.4e-167 591.7 375 76.5
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 5.7e-167 591.3 409 71.9
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 9.7e-167 590.5 396 73.7
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 9.7e-167 590.5 381 75.1
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-166 590.1 395 73.4
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.3e-166 590.1 395 73.4
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 3.7e-166 588.6 345 80.6
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 4.8e-166 588.2 394 71.8
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.3e-166 587.8 345 82.0
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.8e-165 586.3 371 77.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 5.3e-165 584.7 365 77.3
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 7.0e-165 584.3 373 76.9
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.3e-163 580.1 407 71.5
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.3e-163 580.1 308 87.3
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.9e-162 576.2 461 65.1
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.7e-161 572.4 321 86.3
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.2e-159 567.0 371 76.5
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.7e-159 564.7 371 73.0
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.5e-159 564.3 312 83.7
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.3e-158 561.2 304 85.2
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 4.5e-156 555.1 363 74.9
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-155 553.5 380 72.6
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.5e-154 549.3 344 74.4
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 7.2e-154 547.7 380 72.1
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 4.7e-153 545.0 347 75.2
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.3e-152 542.7 391 70.1
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.3e-152 542.7 344 73.8
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 4.0e-152 542.0 344 73.8
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 1.5e-151 540.0 406 68.7
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.0e-151 539.7 400 70.2
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.7e-151 538.1 324 79.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 7.5e-151 537.7 503 57.1
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.1e-149 532.3 344 73.8
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.6e-148 530.0 343 72.0
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.0e-148 529.6 552 52.4
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 8.6e-147 524.2 304 78.9
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.6e-145 520.0 498 56.2
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.1e-133 480.7 350 66.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 7.8e-132 474.6 245 87.3
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.7e-126 456.8 405 62.5
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.1e-125 454.1 351 61.5
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 6.0e-124 448.4 310 67.4
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.3e-123 446.4 308 70.1
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.3e-107 394.0 323 59.4
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.0e-107 392.9 254 77.2
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-106 390.2 288 69.4
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.6e-105 387.1 349 56.4
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.2e-100 370.9 212 81.1
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.0e-99 366.3 222 79.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-90 337.0 260 67.7
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.7e-89 332.8 288 54.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.5e-82 310.1 211 70.1
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 5.1e-75 285.8 188 74.5
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-66 258.1 334 42.5
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 2.6e-66 256.9 313 43.1
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.3e-65 254.6 127 91.3
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.8e-65 253.4 333 40.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.4e-64 250.4 340 40.6
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.4e-63 246.5 337 41.5
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 7.7e-63 245.4 366 38.3
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 8.5e-54 215.3 336 39.3
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 8.0e-52 208.8 179 63.1
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 4.4e-50 203.0 247 42.5
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.5e-46 189.1 117 81.2
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.2e-41 174.1 155 60.0
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.8e-28 130.6 94 70.2
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 8.3e-25 119.0 55 92.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.2e-24 117.1 159 44.7
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.2e-19 99.8 64 78.1
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.0e-15 87.8 84 60.7
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 3.9e-14 83.6 49 75.5
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.3e-13 80.5 173 37.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.8e-11 74.7 32 93.8
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.3e-11 74.3 117 44.4
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.4e-08 64.3 32 81.2
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.4e-08 63.2 45 64.4


User provided reference genes

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