Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-88 329.7 171 100.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.5e-41 172.2 134 68.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.9e-40 168.7 128 72.7
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 6.4e-35 151.4 111 72.1
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.4e-34 149.4 119 65.5
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 4.2e-34 148.7 113 68.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 4.2e-34 148.7 113 68.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 4.2e-34 148.7 156 53.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 4.2e-34 148.7 113 67.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.2e-34 148.7 113 67.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.2e-34 148.7 157 52.9
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.4e-34 148.3 113 66.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 2.1e-33 146.4 113 66.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.1e-33 146.4 113 65.5
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.7e-33 146.0 114 68.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.0e-33 144.8 114 64.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-32 144.1 107 68.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-32 144.1 107 68.2
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.3e-32 143.7 107 67.3
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.3e-32 142.9 113 65.5
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 3.0e-32 142.5 114 64.0
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.9e-32 142.1 113 63.7
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.9e-32 142.1 107 67.3
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.1e-32 141.7 117 63.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 5.1e-32 141.7 113 65.5
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.5e-31 140.2 113 63.7
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.9e-31 139.8 113 63.7
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.9e-31 139.8 129 56.6
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.5e-31 139.4 132 56.8
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.5e-31 139.4 119 63.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.3e-31 139.0 112 64.3
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.3e-31 139.0 112 64.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.3e-31 139.0 111 66.7
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.3e-31 138.7 98 74.5
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 4.3e-31 138.7 113 61.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 5.6e-31 138.3 123 56.9
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.3e-31 137.9 111 64.0
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 7.3e-31 137.9 113 65.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 9.6e-31 137.5 111 64.9
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.3e-30 137.1 115 64.3
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.3e-30 137.1 115 64.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.3e-30 137.1 115 64.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.3e-30 137.1 115 64.3
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.6e-30 136.7 109 65.1
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.6e-30 136.7 98 71.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.6e-30 136.7 107 65.4
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.6e-30 136.7 119 59.7
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.6e-30 136.7 113 63.7
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.1e-30 136.3 113 63.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.1e-30 136.3 105 68.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.6e-30 135.6 107 64.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 3.6e-30 135.6 107 63.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.8e-30 135.2 113 62.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 4.8e-30 135.2 125 58.4
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 6.2e-30 134.8 113 62.8
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 8.1e-30 134.4 113 63.7
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.1e-29 134.0 111 62.2
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.1e-29 134.0 113 61.9
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.8e-29 133.3 122 59.8
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.4e-29 132.9 107 62.6
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 2.4e-29 132.9 113 62.8
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.1e-29 132.5 118 59.3
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 5.3e-29 131.7 127 57.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 5.3e-29 131.7 117 59.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 6.9e-29 131.3 131 55.7
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 9.0e-29 131.0 150 50.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 9.0e-29 131.0 107 66.4
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 9.0e-29 131.0 120 60.8
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.5e-28 130.2 94 68.1
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.6e-28 129.4 113 61.9
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.4e-28 129.0 113 61.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.4e-28 129.0 113 61.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 4.5e-28 128.6 113 62.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 5.8e-28 128.3 105 61.9
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 9.9e-28 127.5 112 59.8
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 9.9e-28 127.5 112 59.8
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 9.9e-28 127.5 112 59.8
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 9.9e-28 127.5 112 59.8
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 9.9e-28 127.5 112 59.8
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 9.9e-28 127.5 113 60.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-27 126.7 113 58.4
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.7e-27 126.7 107 63.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.2e-27 126.3 113 58.4
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.2e-27 126.3 107 63.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.2e-27 126.3 107 64.5
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.2e-27 126.3 148 50.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.2e-27 126.3 113 59.3
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 2.9e-27 125.9 107 62.6
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.8e-27 125.6 126 54.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.8e-27 125.6 126 56.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 4.9e-27 125.2 113 58.4
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.9e-27 125.2 126 54.8
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 4.9e-27 125.2 126 54.8
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 8.4e-27 124.4 111 59.5
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 8.4e-27 124.4 117 54.7
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.4e-27 124.4 111 59.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-26 124.0 111 58.6
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.4e-26 123.6 126 54.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-26 123.2 92 71.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.1e-25 119.8 94 67.0
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.0e-25 118.2 87 71.3
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 5.1e-24 115.2 104 57.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 8.7e-24 114.4 110 54.5
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-23 113.2 96 59.4
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 9.6e-23 110.9 99 58.6
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-21 107.5 108 55.6
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 5.3e-21 105.1 123 48.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 9.0e-21 104.4 109 52.3
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.2e-20 104.0 94 59.6
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.8e-20 101.7 99 52.5
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.0e-19 100.9 73 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.9e-19 99.4 100 52.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 2.1e-17 93.2 99 48.5
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 4.6e-17 92.0 103 47.6
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 7.9e-17 91.3 99 49.5
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.3e-16 90.5 95 49.5
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.8e-16 90.1 116 44.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 5.1e-16 88.6 99 48.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.9e-15 86.7 108 45.4
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-14 84.0 114 42.1
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.3e-14 84.0 75 57.3
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.8e-14 82.0 77 57.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.6e-12 76.3 55 69.1
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.8e-12 75.1 80 56.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-11 73.9 57 63.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 4.6e-09 65.5 40 77.5
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.8e-08 63.5 43 72.1
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.1e-07 60.8 68 54.4
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.3e-07 59.3 56 57.1
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 4.8e-06 55.5 37 67.6


User provided reference genes

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