Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G061 Amborella trichopoda HOM05D001273 ORTHO05D008499 2.4e-56 221.9 106 100.0
ATR0311G003 Amborella trichopoda HOM05D001273 ORTHO05D000023 2.7e-31 138.7 72 88.9
CDE05G1369 Ceratophyllum demersum HOM05D001273 ORTHO05D000023 9.8e-18 93.6 75 65.3
Sed0004015 Sechium edule HOM05D001273 ORTHO05D000023 1.3e-17 93.2 75 64.0
Lalb_Chr17g0341781 Lupinus albus HOM05D001273 ORTHO05D000023 2.2e-17 92.4 75 65.3
Lj1A871T88 Lonicera japonica HOM05D001273 ORTHO05D000023 1.1e-16 90.1 75 64.0
ClCG05G014350 Citrullus lanatus HOM05D001273 ORTHO05D000023 1.9e-16 89.4 75 62.7
Migut.M01774 Erythranthe guttata HOM05D001273 ORTHO05D000023 1.9e-16 89.4 75 65.3
Nitab4.5_0001913g0020 Nicotiana tabacum HOM05D001273 ORTHO05D000023 3.2e-16 88.6 75 64.0
Nitab4.5_0003812g0070 Nicotiana tabacum HOM05D001273 ORTHO05D000023 4.1e-16 88.2 75 61.3
Aqoxy1G03257 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 5.4e-16 87.8 76 61.8
Gorai.009G435300 Gossypium raimondii HOM05D001273 ORTHO05D000023 5.4e-16 87.8 75 61.3
MELO3C018119.2 Cucumis melo HOM05D001273 ORTHO05D000023 7.1e-16 87.4 76 57.9
DCAR_009573 Daucus carota HOM05D001273 ORTHO05D000023 9.2e-16 87.0 77 58.4
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.2e-15 86.7 75 61.3
Cc05_g13790 Coffea canephora HOM05D001273 ORTHO05D000023 1.2e-15 86.7 75 62.7
Gohir.A04G018300 Gossypium hirsutum HOM05D001273 ORTHO05D000023 1.2e-15 86.7 75 61.3
Manes.03G124300 Manihot esculenta HOM05D001273 ORTHO05D000023 1.2e-15 86.7 75 57.3
Sopen07g032690 Solanum pennellii HOM05D001273 ORTHO05D000023 1.2e-15 86.7 75 61.3
PGSC0003DMG400022323 Solanum tuberosum HOM05D001273 ORTHO05D000023 1.2e-15 86.7 75 61.3
Solyc07g064490.4 Solanum lycopersicum HOM05D001273 ORTHO05D000023 1.6e-15 86.3 75 61.3
Oeu005535.1 Olea europaea HOM05D001273 ORTHO05D000023 2.1e-15 85.9 75 61.3
Peaxi162Scf00964g00149 Petunia axillaris HOM05D001273 ORTHO05D000023 2.1e-15 85.9 75 60.0
RcHm_v2.0_Chr5g0039151 Rosa chinensis HOM05D001273 ORTHO05D000023 2.1e-15 85.9 74 60.8
Lj2g0022649 Lotus japonicus HOM05D001273 ORTHO05D000023 2.7e-15 85.5 73 60.3
Nn2g14015 Nelumbo nucifera HOM05D001273 ORTHO05D000023 2.7e-15 85.5 75 57.3
Thecc.07G042300 Theobroma cacao HOM05D001273 ORTHO05D000023 2.7e-15 85.5 75 58.7
Ca_07343_v3 Cicer arietinum L. HOM05D001273 ORTHO05D000023 3.5e-15 85.1 75 56.0
CsaV3_3G023000 Cucumis sativus L. HOM05D001273 ORTHO05D000023 3.5e-15 85.1 76 56.6
CAN.G337.123 Capsicum annuum HOM05D001273 ORTHO05D000023 4.6e-15 84.7 75 58.7
Cfa018721 Carpinus fangiana HOM05D001273 ORTHO05D000023 4.6e-15 84.7 75 60.0
Glyma.01G093000 Glycine max HOM05D001273 ORTHO05D000023 4.6e-15 84.7 75 57.3
Glyma.09G075100 Glycine max HOM05D001273 ORTHO05D000023 4.6e-15 84.7 75 57.3
Medtr0194s0020 Medicago truncatula HOM05D001273 ORTHO05D000023 6.0e-15 84.3 75 54.7
VMungo1215G0532 Vigna mungo HOM05D001273 ORTHO05D000023 6.0e-15 84.3 75 57.3
TAR627G1024 Trochodendron aralioides HOM05D001273 ORTHO05D000023 7.8e-15 84.0 75 60.0
arahy.Tifrunner.gnm1.ann1.411P2H Arachis hypogaea HOM05D001273 ORTHO05D000023 1.0e-14 83.6 75 57.3
arahy.Tifrunner.gnm1.ann1.VK49LJ Arachis hypogaea HOM05D001273 ORTHO05D000023 1.0e-14 83.6 75 57.3
EL10Ac4g07836 Beta vulgaris HOM05D001273 ORTHO05D000023 1.0e-14 83.6 77 55.8
Sabra16G0289000 Salix brachista HOM05D001273 ORTHO05D000023 1.0e-14 83.6 75 57.3
Sc03g0008640 Simmondsia chinensis HOM05D001273 ORTHO05D000023 1.0e-14 83.6 75 57.3
Haze_09953 Corylus avellana HOM05D001273 ORTHO05D000023 1.3e-14 83.2 75 57.3
HanXRQChr08g0233851 Helianthus annuus HOM05D001273 ORTHO05D000023 1.7e-14 82.8 75 54.7
MD03G1204000 Malus domestica HOM05D001273 ORTHO05D000023 1.7e-14 82.8 75 57.3
Psat2g095640 Pisum sativum HOM05D001273 ORTHO05D000023 1.7e-14 82.8 75 56.0
Potri.001G423800 Populus trichocarpa HOM05D001273 ORTHO05D000023 1.7e-14 82.8 75 56.0
TWI39G0354 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 1.7e-14 82.8 75 57.3
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 2.3e-14 82.4 75 61.3
Lsat_1_v5_gn_8_86560 Lactuca sativa HOM05D001273 ORTHO05D000023 2.3e-14 82.4 75 54.7
Rhsim04G0057600 Rhododendron simsii HOM05D001273 ORTHO05D001742 2.3e-14 82.4 75 58.7
FvH4_3g22500 Fragaria vesca HOM05D001273 ORTHO05D000023 3.0e-14 82.0 74 56.8
FAN11G2124 Fragaria x ananassa HOM05D001273 ORTHO05D000023 3.0e-14 82.0 74 56.8
Sp6g16860 Schrenkiella parvula HOM05D001273 ORTHO05D000023 3.0e-14 82.0 75 56.0
FAN16G2845 Fragaria x ananassa HOM05D001273 ORTHO05D000023 3.9e-14 81.6 74 55.4
FAN21G2406 Fragaria x ananassa HOM05D001273 ORTHO05D000023 3.9e-14 81.6 74 55.4
FAN25G3173 Fragaria x ananassa HOM05D001273 ORTHO05D000023 3.9e-14 81.6 74 55.4
vmacro11730 Vaccinium macrocarpon HOM05D001273 ORTHO05D000023 3.9e-14 81.6 75 57.3
CiPaw.11G188100 Carya illinoinensis HOM05D001273 ORTHO05D000023 5.1e-14 81.3 75 57.3
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 6.6e-14 80.9 75 58.7
Ciclev10008747m.g Citrus clementina HOM05D001273 ORTHO05D000023 6.6e-14 80.9 75 58.7
Eucgr.H01436 Eucalyptus grandis HOM05D001273 ORTHO05D000023 6.6e-14 80.9 75 58.7
QL03p009923 Quercus lobata HOM05D001273 ORTHO05D000023 6.6e-14 80.9 76 55.3
QL08p011142 Quercus lobata HOM05D001273 ORTHO05D000023 6.6e-14 80.9 76 55.3
AL8G30350 Arabidopsis lyrata HOM05D001273 ORTHO05D000023 8.6e-14 80.5 75 54.7
Haze_09662 Corylus avellana HOM05D001273 ORTHO05D000023 8.6e-14 80.5 75 58.7
Eucgr.H01431 Eucalyptus grandis HOM05D001273 ORTHO05D000023 8.6e-14 80.5 75 57.3
Eucgr.H01443 Eucalyptus grandis HOM05D001273 ORTHO05D000023 8.6e-14 80.5 74 55.4
GSVIVG01037628001 Vitis vinifera HOM05D001273 ORTHO05D000023 8.6e-14 80.5 75 56.0
CARHR268230 Cardamine hirsuta HOM05D001273 ORTHO05D000023 1.1e-13 80.1 75 54.7
Lsat_1_v5_gn_7_7020 Lactuca sativa HOM05D001273 ORTHO05D000023 1.1e-13 80.1 75 52.0
Phvul.003G024100 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 1.1e-13 80.1 75 54.7
unitig_8.g3342 Utricularia gibba HOM05D001273 ORTHO05D000023 1.5e-13 79.7 74 52.7
Duzib213G0555 Durio zibethinus HOM05D001273 ORTHO05D000023 1.9e-13 79.3 75 54.7
Thhalv10013970m.g Eutrema salsugineum HOM05D001273 ORTHO05D000023 1.9e-13 79.3 75 56.0
A02p09990 Brassica napus HOM05D001273 ORTHO05D000023 2.5e-13 79.0 76 55.3
CANSAT78G0231 Cannabis sativa HOM05D001273 ORTHO05D000023 2.5e-13 79.0 75 53.3
Carub.0008s1519 Capsella rubella HOM05D001273 ORTHO05D000023 2.5e-13 79.0 75 54.7
Cpa.g.sc97.16 Carica papaya HOM05D001273 ORTHO05D000023 2.5e-13 79.0 75 58.7
Prupe.4G211400 Prunus persica HOM05D001273 ORTHO05D000023 2.5e-13 79.0 75 54.7
SalBow8G1015 Salvia bowleyana HOM05D001273 ORTHO05D000023 3.3e-13 78.6 75 56.0
SGA_v2.0_scaffold80G25947 Striga asiatica HOM05D001273 ORTHO05D000023 3.3e-13 78.6 74 54.1
Atru.BG.149.p Acer truncatum HOM05D001273 ORTHO05D000023 4.3e-13 78.2 74 56.8
Atru.chr2.3372 Acer truncatum HOM05D001273 ORTHO05D000023 4.3e-13 78.2 74 56.8
Aa31LG3G10820 Aethionema arabicum HOM05D001273 ORTHO05D000023 4.3e-13 78.2 76 51.3
CSS0023271 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 5.6e-13 77.8 75 50.7
Hund02065 Selenicereus undatus HOM05D001273 ORTHO05D000023 5.6e-13 77.8 73 56.2
CSS0026370 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 7.3e-13 77.4 75 50.7
CSS0011523 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 1.6e-12 76.3 75 49.3
CSS0028517 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 1.6e-12 76.3 75 49.3
BcaC03g14276 Brassica carinata HOM05D001273 ORTHO05D000023 2.1e-12 75.9 75 54.7
BraA02t06063Z Brassica rapa HOM05D001273 ORTHO05D000023 2.1e-12 75.9 76 52.6
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 2.1e-12 75.9 75 54.7
C02p16570 Brassica napus HOM05D001273 ORTHO05D000023 3.6e-12 75.1 75 54.7
BolC2t07755H Brassica oleracea HOM05D001273 ORTHO05D000023 3.6e-12 75.1 75 54.7
Zm00001eb171690 Zea mays HOM05D001273 ORTHO05D000023 4.7e-12 74.7 73 53.4
AT5G54890 Arabidopsis thaliana HOM05D001273 ORTHO05D000023 8.1e-12 73.9 75 50.7
SHI31851 Sapria himalayana HOM05D001273 ORTHO05D000023 1.1e-11 73.6 74 52.7
BcaB05g22168 Brassica carinata HOM05D001273 ORTHO05D000023 1.4e-11 73.2 75 53.3
Os08g0188000 Oryza sativa ssp. japonica HOM05D001273 ORTHO05D000023 1.4e-11 73.2 74 50.0
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 2.3e-11 72.4 75 52.0
Oeu036064.1 Olea europaea HOM05D001273 ORTHO05D000023 2.9e-09 65.5 83 42.2
ClCG05G001970 Citrullus lanatus HOM05D001273 ORTHO05D000023 3.8e-09 65.1 85 43.5
MELO3C006157.2 Cucumis melo HOM05D001273 ORTHO05D000023 6.4e-09 64.3 85 43.5
Phvul.010G114000 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 1.4e-08 63.2 85 38.8
Glyma.16G024800 Glycine max HOM05D001273 ORTHO05D000023 1.9e-08 62.8 85 40.0
COL.COLO4_12651 Corchorus olitorius HOM05D001273 ORTHO05D000023 2.4e-08 62.4 85 42.4
Duzib138G0745 Durio zibethinus HOM05D001273 ORTHO05D000023 2.4e-08 62.4 86 40.7
CiPaw.02G164500 Carya illinoinensis HOM05D001273 ORTHO05D000023 3.2e-08 62.0 85 43.5
TWI14G1062 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 3.2e-08 62.0 85 41.2
Gohir.D07G150400 Gossypium hirsutum HOM05D001273 ORTHO05D000023 4.1e-08 61.6 85 42.4
Gorai.001G172400 Gossypium raimondii HOM05D001273 ORTHO05D000023 4.1e-08 61.6 85 42.4
QL08p051039 Quercus lobata HOM05D001273 ORTHO05D000023 4.1e-08 61.6 85 40.0
Sed0010108 Sechium edule HOM05D001273 ORTHO05D000023 4.1e-08 61.6 86 40.7
Haze_16710 Corylus avellana HOM05D001273 ORTHO05D000023 5.4e-08 61.2 85 42.4
CsaV3_3G009380 Cucumis sativus L. HOM05D001273 ORTHO05D000023 5.4e-08 61.2 85 42.4
SalBow7G0575 Salvia bowleyana HOM05D001273 ORTHO05D000023 5.4e-08 61.2 83 41.0
VMungo0331G1153 Vigna mungo HOM05D001273 ORTHO05D000023 5.4e-08 61.2 85 38.8
Cpa.g.sc18.168 Carica papaya HOM05D001273 ORTHO05D000023 7.1e-08 60.8 85 40.0
Cc02_g37020 Coffea canephora HOM05D001273 ORTHO05D000023 7.1e-08 60.8 83 41.0
MSTRG.20782 Avicennia marina HOM05D001273 ORTHO05D000023 9.2e-08 60.5 83 42.2
PGSC0003DMG401000006 Solanum tuberosum HOM05D001273 ORTHO05D000023 1.2e-07 60.1 83 39.8
THA.LOC104801472 Tarenaya hassleriana HOM05D001273 ORTHO05D000023 1.2e-07 60.1 85 40.0
Potri.014G074400 Populus trichocarpa HOM05D001273 ORTHO05D000023 1.6e-07 59.7 88 40.9
SGA_v2.0_scaffold153G37053 Striga asiatica HOM05D001273 ORTHO05D000023 1.6e-07 59.7 83 41.0
Atru.chr5.374 Acer truncatum HOM05D001273 ORTHO05D000023 2.1e-07 59.3 86 39.5
Migut.B01670 Erythranthe guttata HOM05D001273 ORTHO05D000023 2.1e-07 59.3 82 41.5
Solyc01g091940.3 Solanum lycopersicum HOM05D001273 ORTHO05D000023 2.1e-07 59.3 83 39.8
Sopen01g037720 Solanum pennellii HOM05D001273 ORTHO05D000023 2.1e-07 59.3 83 39.8
Lalb_Chr03g0039081 Lupinus albus HOM05D001273 ORTHO05D000023 2.7e-07 58.9 86 39.5
Thecc.01G371100 Theobroma cacao HOM05D001273 ORTHO05D000023 2.7e-07 58.9 85 41.2
ATR0564G053 Amborella trichopoda HOM05D001273 ORTHO05D000023 3.5e-07 58.5 93 38.7
BcaB01g02229 Brassica carinata HOM05D001273 ORTHO05D000023 3.5e-07 58.5 86 40.7
CAN.G170.66 Capsicum annuum HOM05D001273 ORTHO05D000023 3.5e-07 58.5 83 39.8
Ciclev10020296m.g Citrus clementina HOM05D001273 ORTHO05D000023 3.5e-07 58.5 86 39.5
FAN03G1497 Fragaria x ananassa HOM05D001273 ORTHO05D000023 3.5e-07 58.5 87 40.2
Gorai.009G436100 Gossypium raimondii HOM05D001273 ORTHO05D000023 3.5e-07 58.5 62 53.2
BcaC04g24189 Brassica carinata HOM05D001273 ORTHO05D000023 4.6e-07 58.2 76 44.7
BolC9t52957H Brassica oleracea HOM05D001273 ORTHO05D000023 4.6e-07 58.2 76 44.7
CSS0037775 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 4.6e-07 58.2 68 45.6
Lj9A575T47 Lonicera japonica HOM05D001273 ORTHO05D000023 6.0e-07 57.8 86 38.4
PGR042G1866 Punica granatum HOM05D001273 ORTHO05D000023 6.0e-07 57.8 86 40.7
DCAR_006892 Daucus carota HOM05D001273 ORTHO05D000023 7.8e-07 57.4 86 38.4
MD02G1197200 Malus domestica HOM05D001273 ORTHO05D000023 7.8e-07 57.4 86 39.5
SEGI_12825 Sequoiadendron giganteum HOM05D001273 ORTHO05D000023 7.8e-07 57.4 87 34.5
Aqoxy6G00497 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 1.0e-06 57.0 85 38.8
ECA233G2880 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.0e-06 57.0 82 42.7
FAN10G1831 Fragaria x ananassa HOM05D001273 ORTHO05D000023 1.0e-06 57.0 85 40.0
Nitab4.5_0001127g0030 Nicotiana tabacum HOM05D001273 ORTHO05D000023 1.0e-06 57.0 83 38.6
Nitab4.5_0003182g0040 Nicotiana tabacum HOM05D001273 ORTHO05D000023 1.0e-06 57.0 83 38.6
Oeu036066.1 Olea europaea HOM05D001273 ORTHO05D000023 1.0e-06 57.0 71 42.3
Hund16972 Selenicereus undatus HOM05D001273 ORTHO05D000023 1.0e-06 57.0 88 39.8
FvH4_7g12730 Fragaria vesca HOM05D001273 ORTHO05D000023 1.3e-06 56.6 86 39.5
Sp6g00300 Schrenkiella parvula HOM05D001273 ORTHO05D000023 1.3e-06 56.6 85 40.0
A09p00640 Brassica napus HOM05D001273 ORTHO05D000023 2.3e-06 55.8 87 39.1
C09p00220 Brassica napus HOM05D001273 ORTHO05D000023 2.3e-06 55.8 87 39.1
BraA09t35696Z Brassica rapa HOM05D001273 ORTHO05D000023 2.3e-06 55.8 87 39.1
PSO170G5607 Papaver somniferum HOM05D001273 ORTHO05D000023 2.3e-06 55.8 87 39.1
Peaxi162Scf00021g00238 Petunia axillaris HOM05D001273 ORTHO05D000023 2.3e-06 55.8 83 37.3
Sc26g0001100 Simmondsia chinensis HOM05D001273 ORTHO05D000023 2.3e-06 55.8 90 37.8
Zm00001eb414780 Zea mays HOM05D001273 ORTHO05D000023 2.3e-06 55.8 89 39.3
Ah.05g175820 Amaranthus hybridus HOM05D001273 ORTHO05D000023 3.0e-06 55.5 87 37.9
Os08g0174900 Oryza sativa ssp. japonica HOM05D001273 ORTHO05D000023 3.0e-06 55.5 57 49.1
Aa31LG5G4460 Aethionema arabicum HOM05D001273 ORTHO05D000023 3.9e-06 55.1 85 37.6
CANSAT56G1283 Cannabis sativa HOM05D001273 ORTHO05D000023 3.9e-06 55.1 87 36.8
Eucgr.E01328 Eucalyptus grandis HOM05D001273 ORTHO05D000023 3.9e-06 55.1 86 37.2
Manes.05G041700 Manihot esculenta HOM05D001273 ORTHO05D000023 3.9e-06 55.1 85 38.8
Nn6g31968 Nelumbo nucifera HOM05D001273 ORTHO05D000023 3.9e-06 55.1 84 40.5
Prupe.2G151400 Prunus persica HOM05D001273 ORTHO05D000023 3.9e-06 55.1 86 37.2
Actinidia31450 Actinidia chinensis HOM05D001273 ORTHO05D026346 5.1e-06 54.7 89 37.1
PSO017G1435 Papaver somniferum HOM05D001273 ORTHO05D000023 5.1e-06 54.7 87 37.9
Lsat_1_v5_gn_3_135080 Lactuca sativa HOM05D001273 ORTHO05D000023 6.6e-06 54.3 82 41.5
GSVIVG01027582001 Vitis vinifera HOM05D001273 ORTHO05D000023 6.6e-06 54.3 85 38.8
AT4G31010 Arabidopsis thaliana HOM05D001273 ORTHO05D000023 8.6e-06 53.9 85 37.6
CSS0002148 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 8.6e-06 53.9 68 44.1
Carub.0007s0950 Capsella rubella HOM05D001273 ORTHO05D000023 8.6e-06 53.9 59 49.2
CARHR171470 Cardamine hirsuta HOM05D001273 ORTHO05D000023 8.6e-06 53.9 63 47.6
HPP92_006015 Vanilla planifolia HOM05D001273 ORTHO05D000023 8.6e-06 53.9 39 61.5


User provided reference genes

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