Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0751G070 Amborella trichopoda HOM05D000133 ORTHO05D069131 1.0e-78 296.6 140 100.0
Hma1.2p1_0522F.1_g171530 Hydrangea macrophylla HOM05D000133 ORTHO05D005407 1.0e-17 94.0 146 44.5
Sopen01g047580 Solanum pennellii HOM05D000133 ORTHO05D005407 1.5e-13 80.1 55 80.0
PGSC0003DMG400012590 Solanum tuberosum HOM05D000133 ORTHO05D005407 1.5e-13 80.1 55 80.0
CAN.G523.84 Capsicum annuum HOM05D000133 ORTHO05D005407 2.5e-13 79.3 55 80.0
CsaV3_6G005340 Cucumis sativus L. HOM05D000133 ORTHO05D005407 2.5e-13 79.3 52 82.7
Hma1.2p1_0217F.1_g091850 Hydrangea macrophylla HOM05D000133 ORTHO05D005407 2.5e-13 79.3 54 77.8
Solyc01g105030.3 Solanum lycopersicum HOM05D000133 ORTHO05D005407 3.3e-13 79.0 55 78.2
Solyc01g105050.3 Solanum lycopersicum HOM05D000133 ORTHO05D005407 3.3e-13 79.0 55 78.2
Sopen01g047560 Solanum pennellii HOM05D000133 ORTHO05D005407 3.3e-13 79.0 55 78.2
PGSC0003DMG400012591 Solanum tuberosum HOM05D000133 ORTHO05D005407 3.3e-13 79.0 55 78.2
MSTRG.5263 Avicennia marina HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
BolC8t49357H Brassica oleracea HOM05D000133 ORTHO05D005407 4.3e-13 78.6 103 49.5
MELO3C008358.2 Cucumis melo HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
Glyma.08G180000 Glycine max HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
Glyma.15G052400 Glycine max HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
Lalb_Chr10g0097711 Lupinus albus HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
Medtr2g008610 Medicago truncatula HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
Nitab4.5_0002865g0050 Nicotiana tabacum HOM05D000133 ORTHO05D005407 4.3e-13 78.6 55 78.2
THA.LOC104808189 Tarenaya hassleriana HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
VMungo0540G0283 Vigna mungo HOM05D000133 ORTHO05D005407 4.3e-13 78.6 43 95.3
EL10Ac8g19352 Beta vulgaris HOM05D000133 ORTHO05D005407 5.7e-13 78.2 55 76.4
CAN.G523.87 Capsicum annuum HOM05D000133 ORTHO05D005407 5.7e-13 78.2 55 78.2
Nitab4.5_0002865g0060 Nicotiana tabacum HOM05D000133 ORTHO05D005407 5.7e-13 78.2 55 78.2
Nitab4.5_0003434g0030 Nicotiana tabacum HOM05D000133 ORTHO05D005407 5.7e-13 78.2 55 78.2
unitig_22.g6080 Utricularia gibba HOM05D000133 ORTHO05D005407 5.7e-13 78.2 52 80.8
Oeu037187.1 Olea europaea HOM05D000133 ORTHO05D005407 7.4e-13 77.8 51 80.4
Actinidia00259 Actinidia chinensis HOM05D000133 ORTHO05D005407 9.6e-13 77.4 55 78.2
Ca_00127_v3 Cicer arietinum L. HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Haze_10642 Corylus avellana HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Migut.N01061 Erythranthe guttata HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
HanXRQChr10g0295961 Helianthus annuus HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Hma1.2p1_1341F.1_g276860 Hydrangea macrophylla HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Lsat_1_v5_gn_9_117441 Lactuca sativa HOM05D000133 ORTHO05D005407 9.6e-13 77.4 52 78.8
Lj5A241G62 Lonicera japonica HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
MBI15_g00879_MAGBIO Magnolia biondii HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Psat1g216920 Pisum sativum HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
PGR042G1882 Punica granatum HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
RcHm_v2.0_Chr7g0226291 Rosa chinensis HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Sed0005610 Sechium edule HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
TWI14G1125 Tripterygium wilfordii HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
TWI59G0207 Tripterygium wilfordii HOM05D000133 ORTHO05D005407 9.6e-13 77.4 43 93.0
Atru.chr6.1130 Acer truncatum HOM05D000133 ORTHO05D005407 1.3e-12 77.0 55 74.5
Lj9A320T29 Lonicera japonica HOM05D000133 ORTHO05D005407 1.3e-12 77.0 43 93.0
Lju1163A0T46 Lonicera japonica HOM05D000133 ORTHO05D005407 1.3e-12 77.0 43 93.0
Lj6g0003994 Lotus japonicus HOM05D000133 ORTHO05D005407 1.3e-12 77.0 55 78.2
MD15G1411600 Malus domestica HOM05D000133 ORTHO05D005407 1.3e-12 77.0 43 93.0
Peaxi162Scf00152g01119 Petunia axillaris HOM05D000133 ORTHO05D005407 1.3e-12 77.0 43 93.0
Ah.14g085470 Amaranthus hybridus HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
ATR0680G016 Amborella trichopoda HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
CANSAT11G2240 Cannabis sativa HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
CiPaw.05G037900 Carya illinoinensis HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
CiPaw.06G152400 Carya illinoinensis HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
AUR62027370 Chenopodium quinoa HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
Lalb_Chr20g0123081 Lupinus albus HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
Phvul.006G207300 Phaseolus vulgaris HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
Sed0022231 Sechium edule HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
TPR.G13606 Trifolium pratense HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
unitig_8.g3473 Utricularia gibba HOM05D000133 ORTHO05D005407 1.6e-12 76.6 52 78.8
HPP92_002333 Vanilla planifolia HOM05D000133 ORTHO05D005407 1.6e-12 76.6 43 93.0
arahy.Tifrunner.gnm1.ann1.4KW7H9 Arachis hypogaea HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 93.0
arahy.Tifrunner.gnm1.ann1.JVEI5Y Arachis hypogaea HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 93.0
CSS0014245 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 93.0
Cpa.g.sc42.88 Carica papaya HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
DCAR_029208 Daucus carota HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
DCAR_029209 Daucus carota HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
ECA240G0768 Erigeron canadensis HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
Lsat_1_v5_gn_5_107040 Lactuca sativa HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
Os04g0457000 Oryza sativa ssp. japonica HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
Potri.003G020400 Populus trichocarpa HOM05D000133 ORTHO05D005407 2.1e-12 76.3 52 78.8
Sabra01G0162200 Salix brachista HOM05D000133 ORTHO05D005407 2.1e-12 76.3 55 76.4
Hund06708 Selenicereus undatus HOM05D000133 ORTHO05D005407 2.1e-12 76.3 56 75.0
THA.LOC104812448 Tarenaya hassleriana HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 93.0
Zm00001eb066480 Zea mays HOM05D000133 ORTHO05D005407 2.1e-12 76.3 43 90.7
Aqoxy5G01967 Aquilegia oxysepala HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
Duzib248G1224 Durio zibethinus HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 93.0
FvH4_5g30940 Fragaria vesca HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
FAN04G0220 Fragaria x ananassa HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
FAN13G0572 Fragaria x ananassa HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
FAN18G3012 Fragaria x ananassa HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
Glyma.05G119000 Glycine max HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
MD08G1220900 Malus domestica HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
Prupe.1G557800 Prunus persica HOM05D000133 ORTHO05D005407 2.8e-12 75.9 43 90.7
AL1G27970 Arabidopsis lyrata HOM05D000133 ORTHO05D005407 3.7e-12 75.5 43 90.7
Cfa005626 Carpinus fangiana HOM05D000133 ORTHO05D005407 3.7e-12 75.5 43 90.7
CDE10G0692 Ceratophyllum demersum HOM05D000133 ORTHO05D005407 3.7e-12 75.5 43 90.7
Glyma.08G074000 Glycine max HOM05D000133 ORTHO05D005407 3.7e-12 75.5 43 90.7
Nn1g05280 Nelumbo nucifera HOM05D000133 ORTHO05D005407 3.7e-12 75.5 42 90.5
Phvul.002G207500 Phaseolus vulgaris HOM05D000133 ORTHO05D005407 3.7e-12 75.5 43 90.7
Aa31LG7G410 Aethionema arabicum HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
BcaC07g41477 Brassica carinata HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
A06p11890 Brassica napus HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
A09p61150 Brassica napus HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
C05p14070 Brassica napus HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
C08p44750 Brassica napus HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
BolC5t30138H Brassica oleracea HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
BolC8t52021H Brassica oleracea HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
BraA06t24359Z Brassica rapa HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
BraA09t41489Z Brassica rapa HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
Ciclev10029116m.g Citrus clementina HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 88.4
ECA234G1650 Erigeron canadensis HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 88.4
Gohir.D02G196000 Gossypium hirsutum HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
Gorai.005G219000 Gossypium raimondii HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
HanXRQChr03g0066961 Helianthus annuus HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 88.4
Peaxi162Scf00001g00212 Petunia axillaris HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 88.4
QL11p019860 Quercus lobata HOM05D000133 ORTHO05D005407 4.8e-12 75.1 54 75.9
Sp1g14130 Schrenkiella parvula HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
TAR625G0473 Trochodendron aralioides HOM05D000133 ORTHO05D005407 4.8e-12 75.1 43 90.7
vmacro01817 Vaccinium macrocarpon HOM05D000133 ORTHO05D005407 4.8e-12 75.1 56 73.2
AUR62031289 Chenopodium quinoa HOM05D000133 ORTHO05D005407 6.3e-12 74.7 55 74.5
COL.COLO4_33854 Corchorus olitorius HOM05D000133 ORTHO05D005407 6.3e-12 74.7 43 90.7
Eucgr.G00777 Eucalyptus grandis HOM05D000133 ORTHO05D005407 6.3e-12 74.7 43 90.7
Gohir.A03G172800 Gossypium hirsutum HOM05D000133 ORTHO05D005407 6.3e-12 74.7 43 90.7
HanXRQChr16g0514061 Helianthus annuus HOM05D000133 ORTHO05D005407 6.3e-12 74.7 43 88.4
Thecc.02G141900 Theobroma cacao HOM05D000133 ORTHO05D005407 6.3e-12 74.7 43 90.7
Manes.14G167100 Manihot esculenta HOM05D000133 ORTHO05D005407 8.2e-12 74.3 43 88.4
Potri.001G210000 Populus trichocarpa HOM05D000133 ORTHO05D005407 8.2e-12 74.3 43 88.4
VMungo0251G0676 Vigna mungo HOM05D000133 ORTHO05D005407 8.2e-12 74.3 43 88.4
CSS0010636 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
Migut.B00625 Erythranthe guttata HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
Eucgr.I02677 Eucalyptus grandis HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 90.7
Thhalv10008533m.g Eutrema salsugineum HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
PSO133G0005 Papaver somniferum HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
PSO541G4447 Papaver somniferum HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
Rhsim11G0135900 Rhododendron simsii HOM05D000133 ORTHO05D005407 1.1e-11 73.9 56 71.4
SalBow5G4065 Salvia bowleyana HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
Sc18g0003750 Simmondsia chinensis HOM05D000133 ORTHO05D005407 1.1e-11 73.9 41 92.7
TAR381G1555 Trochodendron aralioides HOM05D000133 ORTHO05D005407 1.1e-11 73.9 43 88.4
AT1G15820 Arabidopsis thaliana HOM05D000133 ORTHO05D005407 1.4e-11 73.6 43 88.4
BcaC07g38795 Brassica carinata HOM05D000133 ORTHO05D005407 1.4e-11 73.6 43 86.0
A08p31490 Brassica napus HOM05D000133 ORTHO05D005407 1.4e-11 73.6 43 86.0
BraA08t35071Z Brassica rapa HOM05D000133 ORTHO05D005407 1.4e-11 73.6 43 86.0
Nitab4.5_0003434g0050 Nicotiana tabacum HOM05D000133 ORTHO05D005407 1.4e-11 73.6 43 88.4
Zm00001eb433540 Zea mays HOM05D000133 ORTHO05D005407 1.4e-11 73.6 43 88.4
FAN08G1713 Fragaria x ananassa HOM05D000133 ORTHO05D005407 1.8e-11 73.2 43 88.4
Gohir.A04G112750 Gossypium hirsutum HOM05D000133 ORTHO05D005407 1.8e-11 73.2 43 88.4
Gohir.A04G112800 Gossypium hirsutum HOM05D000133 ORTHO05D005407 1.8e-11 73.2 43 88.4
Gorai.012G141200 Gossypium raimondii HOM05D000133 ORTHO05D005407 1.8e-11 73.2 43 88.4
Carub.0001s1561 Capsella rubella HOM05D000133 ORTHO05D005407 3.1e-11 72.4 43 86.0
DCAR_021849 Daucus carota HOM05D000133 ORTHO05D005407 5.3e-11 71.6 43 86.0
CARHR016330 Cardamine hirsuta HOM05D000133 ORTHO05D005407 1.2e-10 70.5 43 83.7
SGA_v2.0_scaffold332G48955 Striga asiatica HOM05D000133 ORTHO05D005407 1.2e-10 70.5 43 83.7
SEGI_05289 Sequoiadendron giganteum HOM05D000133 ORTHO05D005407 1.5e-10 70.1 43 83.7
AagrBONN_evm.TU.Sc2ySwM_228.4144 Anthoceros agrestis HOM05D000133 ORTHO05D005407 4.5e-10 68.6 43 83.7
Pp3c1_34210 Physcomitrium patens HOM05D000133 ORTHO05D005407 5.9e-10 68.2 43 83.7
Pp3c1_34240 Physcomitrium patens HOM05D000133 ORTHO05D005407 5.9e-10 68.2 43 83.7
SMO307G0015 Selaginella moellendorffii HOM05D000133 ORTHO05D005407 5.9e-10 68.2 43 81.4
ClCG08G006910 Citrullus lanatus HOM05D000133 ORTHO05D005407 7.6e-10 67.8 36 94.4
Mapoly0052s0039 Marchantia polymorpha HOM05D000133 ORTHO05D005407 1.0e-09 67.4 43 81.4
CBR_g85882 Chara braunii HOM05D000133 ORTHO05D005407 2.1e-07 59.7 43 72.1


User provided reference genes

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