Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 4.6e-265 917.9 694 100.0
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.4e-133 481.1 703 67.9
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.9e-133 480.7 708 68.2
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 1.2e-132 478.0 696 50.9
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 2.7e-132 476.9 708 68.4
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 5.6e-130 469.2 674 68.2
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.1e-129 467.2 702 67.5
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 2.8e-129 466.8 675 70.7
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 1.8e-128 464.2 674 70.3
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 5.3e-128 462.6 693 70.0
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 9.0e-128 461.8 696 69.4
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 3.4e-127 459.9 664 73.0
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.0e-126 458.4 675 67.4
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 2.2e-126 457.2 693 68.5
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 8.4e-126 455.3 670 70.3
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.5e-125 453.8 703 67.1
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.2e-124 451.4 674 67.4
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.6e-124 451.1 698 70.2
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 2.1e-124 450.7 668 69.2
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 6.0e-124 449.1 707 65.6
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 1.1e-122 444.9 703 67.0
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.1e-122 444.9 692 70.4
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.5e-122 444.5 700 68.0
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.9e-122 444.1 658 69.1
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.9e-122 444.1 691 68.0
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 3.3e-122 443.4 706 59.2
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 7.4e-122 442.2 693 67.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.3e-121 441.4 702 67.0
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 2.8e-121 440.3 668 61.1
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.4e-120 438.0 691 68.9
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 3.1e-120 436.8 667 69.6
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.1e-120 436.4 690 64.9
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.9e-120 435.6 707 64.9
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 9.0e-120 435.3 667 69.4
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.2e-119 434.9 699 67.8
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 2.2e-118 430.6 660 72.3
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.2e-118 430.6 655 67.5
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.2e-118 430.6 669 67.7
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 8.5e-118 428.7 661 71.7
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 8.5e-118 428.7 664 67.0
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-117 427.9 698 65.2
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.4e-117 427.9 689 66.3
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 4.2e-117 426.4 710 66.2
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 1.2e-116 424.9 671 65.4
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.1e-116 424.1 698 65.0
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.7e-116 423.7 670 68.2
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 1.8e-115 421.0 663 67.6
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 3.0e-115 420.2 707 64.2
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 8.8e-115 418.7 700 65.3
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.8e-113 413.7 724 52.1
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.1e-112 411.8 671 65.1
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 3.1e-112 410.2 668 68.0
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 5.3e-112 409.5 689 58.5
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 6.9e-112 409.1 703 64.6
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 9.1e-112 408.7 709 48.4
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 1.5e-111 407.9 666 65.5
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 2.2e-110 404.1 665 65.9
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 3.8e-110 403.3 790 50.9
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 5.0e-110 402.9 694 67.4
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 3.2e-109 400.2 686 65.7
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.2e-109 400.2 699 63.2
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.7e-108 396.4 659 69.8
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 6.7e-107 392.5 700 64.4
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.1e-106 391.7 701 64.3
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 9.7e-106 388.7 703 62.7
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.1e-104 385.2 537 75.8
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 4.1e-104 383.3 493 68.6
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.0e-103 380.9 692 62.7
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 2.6e-103 380.6 682 64.2
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.9e-102 377.1 700 53.4
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.4e-101 374.8 702 61.1
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 1.9e-101 374.4 834 41.2
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.2e-101 373.6 706 54.1
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 9.4e-101 372.1 667 63.3
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.7e-100 369.8 661 65.4
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 2.3e-99 367.5 706 49.9
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 5.2e-99 366.3 468 81.0
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 8.8e-99 365.5 470 80.9
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.4e-98 363.2 669 37.7
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 2.2e-97 360.9 490 78.8
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 8.2e-97 359.0 487 78.4
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 1.8e-96 357.8 491 77.8
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 2.4e-96 357.5 470 80.4
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 2.4e-96 357.5 488 78.7
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.2e-95 355.1 488 77.5
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 3.5e-95 353.6 470 80.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.8e-94 350.1 700 63.0
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 6.5e-94 349.4 700 62.7
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.9e-93 347.8 468 79.9
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 4.2e-93 346.7 483 65.2
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.7e-92 344.0 492 76.6
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 8.0e-92 342.4 711 42.6
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.2e-90 338.6 487 77.2
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 3.3e-90 337.0 833 43.3
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 2.0e-87 327.8 391 52.7
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 9.4e-85 318.9 488 75.4
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 1.6e-84 318.2 630 61.9
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.6e-84 318.2 719 61.3
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 2.7e-84 317.4 707 59.4
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 4.7e-84 316.6 692 59.5
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 1.4e-83 315.1 470 76.8
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 1.4e-83 315.1 470 76.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 3.0e-83 313.9 497 74.0
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 5.2e-83 313.2 489 75.5
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 3.4e-82 310.5 603 64.5
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 5.7e-82 309.7 582 66.3
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 1.2e-79 302.0 401 46.4
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.6e-76 291.6 322 53.1
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 6.3e-73 279.6 356 76.1
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 5.4e-72 276.6 467 74.3
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 5.4e-72 276.6 422 79.1
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 1.5e-66 258.5 458 73.6
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 6.4e-65 253.1 450 58.2
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.9e-64 251.5 435 76.6
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 8.6e-62 242.7 660 56.5
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 1.2e-58 232.3 416 42.1
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.3e-57 228.8 130 83.8
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-56 225.7 427 75.2
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 1.1e-56 225.7 371 39.6
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.9e-56 224.9 406 44.6
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 2.4e-56 224.6 492 42.5
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-56 224.6 427 76.1
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.1e-56 223.8 345 44.1
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.8e-55 219.5 418 70.8
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.3e-54 218.0 129 81.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.9e-53 214.9 186 59.7
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 5.8e-50 203.4 141 70.9
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 5.2e-43 180.3 383 34.5
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 2.1e-39 168.3 365 47.7
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 8.1e-36 156.4 122 61.5
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-34 152.1 393 73.5
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 7.6e-34 149.8 388 74.2
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.9e-33 147.1 136 59.6
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 3.5e-31 141.0 92 72.8
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.7e-30 138.7 79 81.0
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.1e-29 136.0 80 78.8
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 1.3e-28 132.5 348 33.3
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 2.8e-28 131.3 136 52.9
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 6.2e-28 130.2 417 55.9
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.4e-27 128.3 388 29.1
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.0e-27 127.5 134 49.3
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-26 125.6 134 47.8
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.6e-26 124.8 95 58.9
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.5e-26 124.0 138 50.0
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 7.6e-26 123.2 134 47.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 7.6e-26 123.2 134 47.0
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 9.9e-26 122.9 138 49.3
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 4.9e-25 120.6 364 44.2
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.1e-24 119.4 342 41.5
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 1.9e-24 118.6 290 37.2
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.4e-21 106.7 354 37.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 2.1e-20 105.1 108 48.1
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.1e-19 102.8 370 31.1
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.2e-18 99.4 307 34.9
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.8e-18 97.1 53 73.6
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.9e-17 94.0 61 72.1
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 6.4e-17 93.6 305 39.3
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.7e-15 88.2 84 58.3
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 7.9e-15 86.7 227 33.9
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 3.0e-14 84.7 71 60.6
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 1.9e-13 82.0 54 74.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.4e-13 80.1 304 50.3
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.6e-13 79.7 313 43.1
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-12 79.3 304 50.3
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-12 79.3 304 50.0
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-12 79.3 81 58.0
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-12 79.3 304 50.0
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 3.7e-12 77.8 154 31.8
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 4.8e-12 77.4 47 76.6
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 4.8e-12 77.4 107 43.9
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 4.8e-12 77.4 47 76.6
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.2e-12 77.0 304 36.2
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.2e-12 76.6 54 63.0
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.2e-12 76.6 81 56.8
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.2e-12 76.6 54 63.0
Aqoxy2G01592 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.9e-09 68.2 148 39.2
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.9e-09 68.2 47 68.1
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.9e-09 67.4 45 71.1
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 7.9e-07 60.1 79 38.0
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 7.9e-07 60.1 91 45.1
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 1.3e-06 59.3 54 55.6


User provided reference genes

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