Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 5.5e-101 370.9 183 100.0
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 85.2
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.6e-87 326.2 182 85.7
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 85.8
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 84.2
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 84.2
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 84.2
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 84.2
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 84.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 84.2
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 85.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 83.6
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 83.6
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 84.2
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 83.6
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 83.1
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 84.2
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 82.5
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.5e-85 318.9 181 84.0
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.6
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 82.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 82.5
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 81.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 81.4
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 83.1
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 83.6
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 82.5
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.6
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.1
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 80.9
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 80.9
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.6
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 83.1
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 83.6
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 80.3
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 80.9
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 79.8
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 79.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 4.0e-83 311.6 190 79.5
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 79.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 81.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 80.9
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 81.4
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 79.8
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.2
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.2
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 80.3
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 79.8
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.5e-82 309.7 182 79.7
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 80.3
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 80.3
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 78.7
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.8
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 78.7
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 78.7
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 78.7
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 79.8
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 79.8
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.3e-81 306.6 182 81.9
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 78.7
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.2e-81 305.8 183 79.2
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 78.7
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.8e-81 305.4 182 78.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.9
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 78.7
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 81.2
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 79.2
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 76.5
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 78.7
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 77.6
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 78.1
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.8e-80 302.8 182 77.5
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 79.6
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 77.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 77.3
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 77.3
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 77.3
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.2e-79 300.1 183 78.1
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 77.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 78.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.0e-79 299.3 181 77.3
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 77.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 76.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.7e-79 298.9 183 74.9
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 76.8
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 78.5
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.9e-79 297.7 183 78.1
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 77.9
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 77.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 77.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 77.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 77.9
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 78.1
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 77.6
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 76.5
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 8.6e-78 293.9 184 76.1
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 76.8
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.9e-77 292.7 184 76.6
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 76.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.5e-77 292.4 183 76.5
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.3e-77 292.0 183 73.8
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 183 76.5
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.2e-76 290.0 181 75.7
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.2e-76 290.0 181 75.7
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.2e-76 290.0 184 75.0
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.8e-75 286.2 184 76.1
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.3e-75 285.8 182 74.2
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 3.0e-75 285.4 183 74.9
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 5.2e-75 284.6 183 74.9
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.2e-74 283.5 182 76.4
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 4.4e-74 281.6 184 72.3
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 7.5e-74 280.8 183 69.4
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 9.8e-74 280.4 228 62.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.7e-73 279.6 183 72.7
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.5e-71 271.9 185 70.8
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.3e-70 270.0 219 63.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 3.0e-70 268.9 181 69.6
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 8.6e-70 267.3 184 66.8
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.1e-69 266.9 155 78.7
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 9.5e-69 263.8 183 73.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.2e-68 263.5 152 80.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-66 256.9 155 79.4
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.0e-66 256.1 152 81.6
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 4.4e-66 255.0 183 69.4
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.6e-63 246.5 181 69.1
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.0e-62 243.8 138 84.1
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 4.3e-61 238.4 188 67.6
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 1.1e-59 233.8 138 78.3
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.8e-59 233.0 181 63.5
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.7e-57 225.3 185 62.7
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 8.3e-57 224.2 183 62.8
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.6e-53 211.5 183 60.1
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 5.6e-53 211.5 155 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 7.3e-53 211.1 152 66.4
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.1e-51 205.7 179 61.5
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.7e-49 199.9 158 61.4
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.2e-47 193.7 186 50.0
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 5.1e-46 188.3 102 85.3
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 5.6e-45 184.9 102 85.3
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 8.1e-44 181.0 146 59.6
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.8e-43 179.9 99 85.9
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.8e-43 179.9 102 81.4
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.1e-43 179.1 100 86.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 3.1e-43 179.1 100 83.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 7.6e-42 174.5 158 56.3
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.6e-39 166.8 134 61.2
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 4.6e-39 165.2 106 71.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.5e-34 148.7 105 66.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 5.4e-32 141.7 99 65.7
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.9e-30 135.6 78 83.3
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 2.5e-29 132.9 81 77.8
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 8.1e-28 127.9 101 64.4
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 9.9e-26 120.9 81 69.1
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 2.4e-24 116.3 106 54.7
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 3.7e-20 102.4 68 64.7
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 3.1e-19 99.4 106 52.8
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.5e-18 95.5 52 86.5
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.1e-15 86.7 187 35.3
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 6.1e-07 58.5 181 28.7
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 1.4e-06 57.4 98 35.7
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 1.4e-06 57.4 140 25.0
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.8e-06 57.0 81 40.7
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 3.9e-06 55.8 161 26.1
MSTRG.3325 Avicennia marina HOM05D001645 ORTHO05D001749 5.1e-06 55.5 144 25.7
Potri.011G094500 Populus trichocarpa HOM05D001645 ORTHO05D001749 5.1e-06 55.5 146 24.7
SMO268G0058 Selaginella moellendorffii HOM05D001645 ORTHO05D001749 5.1e-06 55.5 144 25.0
Cc07_g03270 Coffea canephora HOM05D001645 ORTHO05D001749 8.8e-06 54.7 144 25.7
Glyma.04G171400 Glycine max HOM05D001645 ORTHO05D001749 8.8e-06 54.7 146 25.3
Glyma.06G192500 Glycine max HOM05D001645 ORTHO05D001749 8.8e-06 54.7 146 25.3
Phvul.009G172300 Phaseolus vulgaris HOM05D001645 ORTHO05D001749 8.8e-06 54.7 146 25.3
Phvul.009G188600 Phaseolus vulgaris HOM05D001645 ORTHO05D001749 8.8e-06 54.7 146 25.3
VMungo0251G0977 Vigna mungo HOM05D001645 ORTHO05D001749 8.8e-06 54.7 146 25.3
GSVIVG01020020001 Vitis vinifera HOM05D001645 ORTHO05D001749 8.8e-06 54.7 146 24.0


User provided reference genes

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