Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 0.0e+00 1673.7 831 100.0
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.6e-275 952.2 834 59.5
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 8.5e-274 947.2 834 59.1
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 9.7e-270 933.7 834 59.0
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-269 932.6 836 59.1
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 2.0e-267 926.0 828 59.3
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.4e-265 919.8 839 58.3
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.4e-265 919.8 872 57.3
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.2e-265 918.3 834 58.3
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 5.5e-265 917.9 837 58.4
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 5.1e-263 911.4 837 57.5
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 6.7e-263 911.0 831 57.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.0e-262 909.4 834 57.6
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 4.4e-262 908.3 832 57.9
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 5.7e-262 907.9 833 56.7
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 5.7e-262 907.9 832 57.9
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 7.4e-262 907.5 832 57.0
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 5.3e-260 901.4 836 56.9
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.6e-259 899.8 834 57.6
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.5e-259 898.7 838 57.8
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.3e-258 896.7 834 57.2
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 5.0e-258 894.8 840 56.3
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-257 893.6 838 57.4
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.9e-257 892.9 835 56.9
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 3.2e-257 892.1 828 56.6
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 9.4e-257 890.6 828 55.9
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 1.2e-256 890.2 848 55.5
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.7e-256 889.0 833 55.5
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.7e-256 889.0 842 56.8
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.6e-256 888.6 828 56.9
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.6e-256 888.6 839 56.4
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.2e-255 884.8 837 56.4
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.2e-255 884.8 839 56.1
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.5e-254 883.2 831 56.4
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 4.4e-254 881.7 841 55.5
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 5.7e-254 881.3 834 55.3
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 9.7e-254 880.6 851 55.7
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 9.7e-254 880.6 829 55.6
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 3.7e-253 878.6 833 55.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 3.7e-253 878.6 840 54.9
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 4.8e-253 878.2 839 55.1
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.1e-252 875.5 835 55.6
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 1.2e-251 873.6 834 55.0
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 1.2e-251 873.6 841 55.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 1.6e-251 873.2 830 55.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.5e-251 871.7 874 54.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.9e-249 866.3 838 55.5
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 6.1e-248 861.3 835 56.4
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 8.0e-248 860.9 835 55.8
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.8e-247 859.8 845 54.4
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.2e-246 857.1 827 55.0
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-246 856.7 856 53.6
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 4.4e-246 855.1 843 54.6
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 7.5e-246 854.4 822 56.4
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.3e-245 853.6 835 55.8
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 2.2e-245 852.8 832 55.4
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.3e-245 850.9 840 54.3
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 3.1e-244 849.0 826 55.1
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 3.1e-244 849.0 892 53.5
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 4.1e-244 848.6 828 55.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 5.4e-244 848.2 847 54.7
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 7.0e-244 847.8 841 55.3
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 9.1e-244 847.4 837 55.2
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.6e-243 846.7 845 55.4
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.7e-243 845.9 813 56.5
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.0e-242 844.0 845 55.0
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.0e-242 844.0 777 56.6
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.7e-242 843.2 848 54.8
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 2.9e-242 842.4 786 57.1
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 7.2e-241 837.8 840 53.2
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 9.5e-241 837.4 822 54.3
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 9.5e-241 837.4 845 54.7
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.6e-240 836.6 850 53.6
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.6e-240 835.5 846 53.5
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 8.0e-240 834.3 843 53.7
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 8.0e-240 834.3 848 52.8
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.0e-240 834.3 851 53.8
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.0e-239 833.9 843 52.3
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 2.0e-238 829.7 846 51.5
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.6e-238 829.3 838 54.2
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.6e-238 829.3 832 53.1
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 7.5e-238 827.8 743 57.5
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.4e-236 822.8 711 60.9
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 2.4e-236 822.8 846 53.2
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.2e-235 820.5 845 53.4
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.6e-235 820.1 837 53.0
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 2.0e-235 819.7 840 53.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 5.9e-235 818.1 840 52.9
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 7.7e-235 817.8 840 51.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.7e-234 816.6 845 54.1
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 2.9e-234 815.8 832 52.4
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 5.0e-234 815.1 840 52.7
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 6.6e-234 814.7 831 53.1
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 6.6e-234 814.7 841 52.8
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 6.6e-234 814.7 823 54.4
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 1.5e-233 813.5 835 52.6
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 4.3e-233 812.0 840 51.7
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 9.5e-233 810.8 833 52.6
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.2e-232 810.4 841 52.9
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.1e-232 809.7 840 51.7
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.6e-232 808.9 772 55.2
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.6e-232 808.9 781 56.5
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 8.0e-232 807.7 825 52.4
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.8e-231 806.6 832 52.0
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 3.0e-231 805.8 839 52.3
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 5.2e-231 805.1 851 52.5
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 8.9e-231 804.3 833 52.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.2e-230 803.9 838 53.6
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.6e-230 802.7 848 52.0
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.5e-230 801.2 879 51.1
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 7.5e-230 801.2 824 51.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.9e-229 799.3 829 51.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 4.1e-228 795.4 835 52.3
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 9.2e-228 794.3 837 51.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 5.9e-227 791.6 833 51.7
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 3.0e-226 789.3 834 51.7
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 1.1e-225 787.3 833 51.3
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.9e-225 786.6 834 51.3
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 3.6e-224 782.3 724 57.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 6.2e-224 781.6 842 51.0
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 8.0e-224 781.2 871 50.4
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.0e-223 778.9 815 51.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.5e-222 776.9 819 51.5
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 3.4e-222 775.8 739 55.1
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 5.8e-222 775.0 839 51.3
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 7.5e-222 774.6 834 51.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.7e-221 773.5 817 51.5
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 2.2e-221 773.1 823 51.3
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.9e-221 772.7 819 50.5
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 4.6e-219 765.4 825 51.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.3e-218 763.8 845 49.9
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.2e-216 757.3 849 51.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.3e-215 753.1 818 50.4
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.5e-214 750.4 839 49.5
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 2.2e-213 746.5 734 54.5
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 6.4e-213 745.0 832 49.5
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.3e-213 744.6 824 49.9
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 2.3e-207 726.5 710 54.5
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.9e-205 718.8 638 59.1
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 2.3e-202 709.9 846 48.7
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.8e-199 700.3 822 48.7
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 6.9e-199 698.4 834 48.0
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 3.5e-179 632.9 894 41.4
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-172 610.9 927 39.1
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.8e-167 594.0 870 39.9
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.7e-165 587.4 930 38.1
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.9e-154 549.7 724 45.9
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.3e-152 544.7 600 52.0
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 9.1e-143 511.9 915 36.8
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.4e-135 487.3 433 58.7
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.5e-124 451.4 413 58.4
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 6.8e-122 442.6 519 45.9
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 9.2e-119 432.2 648 40.6
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 8.3e-104 382.5 458 48.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 3.3e-100 370.5 324 59.0
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 5.4e-87 326.6 324 54.3
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.5e-84 318.5 303 56.1
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.6e-83 315.1 689 33.5
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 3.0e-77 294.3 253 59.7
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.1e-70 271.6 217 60.8
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.9e-68 265.0 258 53.1
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 1.6e-67 261.9 262 55.0
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 3.9e-61 240.7 940 24.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 2.2e-51 208.4 913 25.3
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.2e-51 206.5 185 55.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.9e-48 198.0 157 59.9
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 1.4e-45 189.1 272 43.0
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.4e-37 162.5 205 47.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.0e-37 161.4 104 70.2
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 9.7e-36 156.4 199 49.2
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 6.3e-35 153.7 213 44.6
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 6.3e-35 153.7 466 27.3
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 6.3e-35 153.7 117 65.8
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.2e-32 145.2 110 67.3
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 4.7e-30 137.5 673 24.2
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.0e-29 136.3 103 65.0
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 2.8e-19 101.7 115 47.0
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 1.2e-17 96.3 93 52.7
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.9e-17 94.0 104 46.2
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.2e-16 92.0 104 45.2
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.5e-15 89.4 104 44.2
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 5.5e-15 87.4 104 43.3
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.4e-12 78.2 103 45.6
Hund08580 Selenicereus undatus HOM05D001715 ORTHO05D003849 4.7e-06 57.8 133 28.6


User provided reference genes

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