Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G164 Amborella trichopoda HOM05D001473 ORTHO05D003934 5.3e-78 294.3 147 100.0
SEGI_38835 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 3.6e-50 201.8 153 72.5
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 6.1e-50 201.1 153 73.9
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 6.1e-50 201.1 153 72.5
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 7.9e-50 200.7 153 72.5
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 1.0e-49 200.3 153 72.5
DCAR_023095 Daucus carota HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 3.9e-49 198.4 153 71.9
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 5.1e-49 198.0 153 71.2
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 8.8e-49 197.2 153 71.2
CsaV3_1G045350 Cucumis sativus L. HOM05D001473 ORTHO05D003934 8.8e-49 197.2 153 71.2
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 8.8e-49 197.2 153 71.2
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
FAN14G3813 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.2
Lj5A229T67 Lonicera japonica HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 71.9
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 1.1e-48 196.8 153 70.6
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 1.5e-48 196.4 153 71.9
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.5e-48 196.4 153 71.2
Haze_25281 Corylus avellana HOM05D001473 ORTHO05D003934 1.5e-48 196.4 153 71.9
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.5e-48 196.4 153 71.2
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 1.5e-48 196.4 153 71.2
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.5e-48 196.4 153 71.2
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 1.5e-48 196.4 153 71.2
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 2.0e-48 196.1 153 70.6
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 2.6e-48 195.7 153 70.6
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 2.6e-48 195.7 153 70.6
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 2.6e-48 195.7 153 71.2
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 3.3e-48 195.3 153 70.6
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 3.3e-48 195.3 153 70.6
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 3.3e-48 195.3 153 70.6
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 3.3e-48 195.3 153 70.6
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 3.3e-48 195.3 153 70.6
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 4.4e-48 194.9 151 72.2
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 5.7e-48 194.5 153 70.6
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 5.7e-48 194.5 153 69.9
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 5.7e-48 194.5 153 69.9
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 5.7e-48 194.5 153 70.6
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 7.4e-48 194.1 153 69.3
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 7.4e-48 194.1 153 69.9
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 7.4e-48 194.1 153 69.9
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 9.7e-48 193.7 153 69.9
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 9.7e-48 193.7 153 69.9
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.3e-47 193.4 153 70.6
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 1.3e-47 193.4 152 71.1
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.3e-47 193.4 153 69.9
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 1.3e-47 193.4 153 69.3
vmacro19999 Vaccinium macrocarpon HOM05D001473 ORTHO05D003934 1.3e-47 193.4 153 71.2
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 1.7e-47 193.0 153 69.3
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 1.7e-47 193.0 153 69.9
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 1.7e-47 193.0 153 68.6
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 2.2e-47 192.6 152 71.1
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 2.2e-47 192.6 153 69.3
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 2.2e-47 192.6 153 68.6
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 2.8e-47 192.2 153 69.9
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 2.8e-47 192.2 153 70.6
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 3.7e-47 191.8 153 68.6
AUR62023607 Chenopodium quinoa HOM05D001473 ORTHO05D003934 4.8e-47 191.4 153 69.9
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 4.8e-47 191.4 153 68.6
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 4.8e-47 191.4 153 68.0
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 6.3e-47 191.0 152 69.1
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 6.3e-47 191.0 153 67.3
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 6.3e-47 191.0 153 67.3
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 8.2e-47 190.7 155 69.0
Dinv05754 Davidia involucrata HOM05D001473 ORTHO05D003934 1.1e-46 190.3 153 70.6
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 1.1e-46 190.3 153 68.0
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 1.4e-46 189.9 153 69.3
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 1.4e-46 189.9 153 69.3
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.4e-46 189.9 153 68.6
SGA_v2.0_scaffold1G00525 Striga asiatica HOM05D001473 ORTHO05D003934 1.4e-46 189.9 151 70.9
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 1.8e-46 189.5 153 67.3
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 2.4e-46 189.1 152 70.4
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 2.4e-46 189.1 151 69.5
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 3.1e-46 188.7 153 68.0
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 4.1e-46 188.3 151 69.5
Lj5g0018401 Lotus japonicus HOM05D001473 ORTHO05D003934 7.0e-46 187.6 153 67.3
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 2.6e-45 185.7 152 67.8
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 2.6e-45 185.7 152 67.8
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 3.4e-45 185.3 153 68.0
GSVIVG01023527001 Vitis vinifera HOM05D001473 ORTHO05D003934 3.4e-45 185.3 133 75.9
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 4.5e-45 184.9 153 66.7
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 4.5e-45 184.9 152 67.8
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 7.7e-45 184.1 151 68.2
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 1.0e-44 183.7 148 70.3
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 2.2e-44 182.6 152 67.8
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 2.2e-44 182.6 152 67.8
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 5.0e-44 181.4 152 67.1
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 5.0e-44 181.4 152 67.1
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 5.0e-44 181.4 152 67.1
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 5.0e-44 181.4 152 67.1
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 5.0e-44 181.4 153 66.0
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 8.5e-44 180.6 152 67.1
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 8.5e-44 180.6 153 66.0
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 8.5e-44 180.6 153 66.0
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 8.5e-44 180.6 152 67.8
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.4e-43 179.9 152 67.1
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 1.6e-42 176.4 152 65.8
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 1.6e-42 176.4 152 65.8
Gohir.A11G247950 Gossypium hirsutum HOM05D001473 ORTHO05D003934 2.7e-42 175.6 140 70.7
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 2.7e-42 175.6 153 64.7
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 3.6e-42 175.3 152 65.8
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 3.6e-42 175.3 152 65.8
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 3.6e-42 175.3 152 65.8
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 3.6e-42 175.3 152 65.8
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 3.6e-42 175.3 153 66.0
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 1.4e-41 173.3 152 65.1
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 1.4e-41 173.3 152 65.1
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 2.3e-41 172.6 153 64.7
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 2.3e-41 172.6 153 64.7
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 3.0e-41 172.2 153 66.0
Peaxi162Scf00135g00313 Petunia axillaris HOM05D001473 ORTHO05D003934 5.2e-41 171.4 153 64.1
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 6.7e-41 171.0 153 64.7
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 1.5e-40 169.9 153 63.4
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.5e-40 169.9 153 63.4
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 1.5e-40 169.9 153 63.4
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 2.0e-40 169.5 153 64.1
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 2.0e-40 169.5 153 62.7
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 2.6e-40 169.1 152 61.8
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 4.4e-40 168.3 151 64.9
Medtr5g010470 Medicago truncatula HOM05D001473 ORTHO05D003934 1.4e-38 163.3 148 63.5
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 3.1e-38 162.2 148 64.9
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 4.5e-37 158.3 150 62.0
Sc03g0006090 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.3e-36 156.8 153 59.5
DCAR_029377 Daucus carota HOM05D001473 ORTHO05D003934 1.5e-35 153.3 152 58.6
CSS0046947 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 5.5e-35 151.4 150 60.7
QL10p043044 Quercus lobata HOM05D001473 ORTHO05D003934 1.2e-34 150.2 130 63.1
MCO01G097 Micromonas commoda HOM05D001473 ORTHO05D003934 2.1e-34 149.4 150 59.3
Migut.B01119 Erythranthe guttata HOM05D001473 ORTHO05D003934 1.0e-33 147.1 148 61.5
RcHm_v2.0_Chr5g0032281 Rosa chinensis HOM05D001473 ORTHO05D003934 2.6e-32 142.5 170 55.3
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 7.5e-32 141.0 148 54.1
Peaxi162Scf00304g00074 Petunia axillaris HOM05D001473 ORTHO05D003934 7.5e-32 141.0 162 58.6
BcaC04g22223 Brassica carinata HOM05D001473 ORTHO05D003934 8.2e-31 137.5 149 57.7
C09p21880 Brassica napus HOM05D001473 ORTHO05D003934 8.2e-31 137.5 149 57.7
BolC9t55093H Brassica oleracea HOM05D001473 ORTHO05D003934 8.2e-31 137.5 149 57.7
Lsat_1_v5_gn_8_72320 Lactuca sativa HOM05D001473 ORTHO05D003934 8.2e-31 137.5 154 57.8
Lsat_1_v5_gn_5_135881 Lactuca sativa HOM05D001473 ORTHO05D003934 5.3e-30 134.8 154 57.1
BcaB07g31211 Brassica carinata HOM05D001473 ORTHO05D003934 4.5e-29 131.7 150 56.0
A09p17580 Brassica napus HOM05D001473 ORTHO05D003934 1.3e-28 130.2 149 55.7
BraA09t37388Z Brassica rapa HOM05D001473 ORTHO05D003934 1.3e-28 130.2 149 55.7
BolC1t01331H Brassica oleracea HOM05D001473 ORTHO05D003934 2.7e-26 122.5 149 55.0
Cfa025479 Carpinus fangiana HOM05D001473 ORTHO05D003934 3.4e-24 115.5 159 49.1
PSO210G0556 Papaver somniferum HOM05D001473 ORTHO05D003934 3.4e-24 115.5 149 51.0
PRCOL_00004307 Prasinoderma coloniale HOM05D001473 ORTHO05D003934 9.8e-24 114.0 150 47.3
Sc03g0006700 Simmondsia chinensis HOM05D001473 ORTHO05D003934 9.1e-22 107.5 97 64.9
HPP92_023313 Vanilla planifolia HOM05D001473 ORTHO05D003934 1.6e-21 106.7 101 61.4
CsaV3_UNG002030 Cucumis sativus L. HOM05D001473 ORTHO05D003934 3.5e-21 105.5 94 64.9
Haze_26225 Corylus avellana HOM05D001473 ORTHO05D003934 1.0e-20 104.0 150 47.3
MCO01G096 Micromonas commoda HOM05D001473 ORTHO05D003934 2.3e-20 102.8 77 71.4
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 8.6e-20 100.9 127 50.4
HPP92_023254 Vanilla planifolia HOM05D001473 ORTHO05D003934 9.5e-19 97.4 94 60.6
Rhsim05G0215100 Rhododendron simsii HOM05D001473 ORTHO05D003934 1.0e-17 94.0 112 56.2
Lsat_1_v5_gn_5_132420 Lactuca sativa HOM05D001473 ORTHO05D003934 4.0e-17 92.0 99 53.5
Zm00001eb142770 Zea mays HOM05D001473 ORTHO05D003934 3.4e-16 89.0 89 59.6
SMO196G0113 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 6.3e-15 84.7 123 44.7
PSO832G3554 Papaver somniferum HOM05D001473 ORTHO05D003934 1.4e-14 83.6 79 60.8
FvH4_3g19210 Fragaria vesca HOM05D001473 ORTHO05D003934 4.1e-14 82.0 94 52.1
SEGI_17278 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 4.7e-10 68.6 60 61.7
BcaB08g37389 Brassica carinata HOM05D001473 ORTHO05D003934 9.2e-06 54.3 118 38.1


User provided reference genes

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