Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.9e-47 192.2 100 100.0
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 6.0e-17 90.9 44 95.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 6.0e-17 90.9 44 95.5
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.0e-17 90.9 44 95.5
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 6.0e-17 90.9 44 95.5
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 6.0e-17 90.9 44 95.5
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 7.9e-17 90.5 44 95.5
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.0e-16 90.1 44 93.2
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.0e-16 90.1 44 93.2
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.3e-16 89.7 44 93.2
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.8e-16 89.4 44 93.2
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.8e-16 89.4 46 91.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 93.2
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 93.2
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 93.2
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 3.0e-16 88.6 44 90.9
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.9e-16 88.2 44 90.9
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.9e-16 88.2 44 90.9
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 3.9e-16 88.2 44 90.9
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 3.9e-16 88.2 44 90.9
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 5.1e-16 87.8 44 90.9
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 5.1e-16 87.8 44 90.9
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 5.1e-16 87.8 44 90.9
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 6.7e-16 87.4 44 90.9
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.7e-16 87.4 44 93.2
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 90.9
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 8.7e-16 87.0 44 88.6
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 93.2
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 90.9
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.1e-15 86.7 44 88.6
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.5e-15 86.3 44 88.6
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.5e-15 86.3 44 88.6
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.5e-15 86.3 44 88.6
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.9e-15 85.9 44 88.6
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.5e-15 85.5 44 88.6
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.5e-15 85.5 44 90.9
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 2.5e-15 85.5 44 90.9
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.5e-15 85.5 44 86.4
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.3e-15 85.1 44 90.9
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 5.6e-15 84.3 44 86.4
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 7.4e-15 84.0 44 86.4
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.3e-14 83.2 44 86.4
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.1e-14 82.4 44 84.1
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 2.1e-14 82.4 44 88.6
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.1e-13 80.1 44 88.6
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.8e-13 79.3 44 81.8
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 3.1e-13 78.6 44 81.8
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 5.3e-13 77.8 44 81.8
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.0e-12 75.9 44 77.3
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 9.3e-10 67.0 44 70.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 7.4e-07 57.4 44 61.4


User provided reference genes

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