Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 3.1e-168 595.1 315 100.0
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.8e-120 436.4 311 74.3
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.7e-118 429.9 304 75.0
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 3.4e-114 415.6 313 70.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 5.7e-114 414.8 289 72.7
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 6.3e-113 411.4 304 71.1
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.4e-112 409.5 288 71.9
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.4e-112 409.5 320 70.0
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.6e-111 406.8 306 70.3
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 7.8e-111 404.4 316 70.6
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.3e-110 403.7 315 69.5
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.3e-110 402.9 305 69.2
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.3e-110 402.9 313 69.0
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 5.0e-110 401.7 304 70.4
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 6.6e-110 401.4 315 69.5
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 8.6e-110 401.0 304 70.4
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 8.6e-110 401.0 314 66.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.9e-109 399.8 288 71.9
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 3.3e-109 399.1 312 67.9
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 3.3e-109 399.1 318 67.6
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 4.3e-109 398.7 320 68.1
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 7.3e-109 397.9 313 69.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.2e-108 397.1 314 69.1
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.1e-108 396.4 313 66.5
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.1e-108 396.4 313 66.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.7e-108 395.2 315 65.4
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.1e-108 394.8 316 66.8
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 8.0e-108 394.4 316 68.0
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 8.0e-108 394.4 312 68.3
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 8.0e-108 394.4 315 67.6
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.0e-107 394.0 309 67.3
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.0e-107 394.0 315 66.3
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.4e-107 393.7 309 66.3
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 2.3e-107 392.9 315 66.7
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.0e-107 392.1 316 66.5
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 4.0e-107 392.1 312 66.3
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 5.2e-107 391.7 307 67.1
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.2e-107 391.7 307 67.1
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.2e-107 391.7 316 65.8
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.9e-107 391.0 317 65.9
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 8.9e-107 391.0 311 67.8
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.2e-106 390.6 314 67.5
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.5e-106 390.2 288 71.5
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.5e-106 390.2 317 65.9
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.5e-106 390.2 314 68.2
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.0e-106 389.8 312 67.0
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.6e-106 389.4 307 66.8
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.6e-106 389.4 313 66.5
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.4e-106 389.0 304 68.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 5.7e-106 388.3 315 66.0
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 5.7e-106 388.3 312 66.7
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 9.8e-106 387.5 311 67.2
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 9.8e-106 387.5 312 65.4
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 9.8e-106 387.5 301 69.1
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.3e-105 387.1 312 66.7
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.7e-105 386.7 283 70.0
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.7e-105 386.7 311 66.2
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 2.9e-105 386.0 313 67.4
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 3.7e-105 385.6 284 69.7
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 3.7e-105 385.6 318 65.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.1e-104 384.0 318 65.1
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.1e-104 384.0 313 65.8
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.8e-104 383.3 300 67.3
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.8e-104 383.3 312 67.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.8e-104 383.3 315 67.6
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.2e-104 382.5 285 69.8
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 3.2e-104 382.5 316 65.2
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 3.2e-104 382.5 312 65.7
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.1e-104 382.1 318 66.0
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 7.0e-104 381.3 310 66.1
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 9.2e-104 380.9 314 65.3
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.2e-104 380.9 313 65.5
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 3.5e-103 379.0 314 65.3
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.5e-103 379.0 310 64.2
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.6e-103 378.6 317 64.7
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 7.8e-103 377.9 383 57.7
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.0e-102 377.5 288 68.1
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.3e-102 377.1 309 65.0
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.7e-102 376.7 315 64.4
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 3.0e-102 375.9 341 62.8
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 2.5e-101 372.9 310 63.9
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.5e-101 372.9 313 65.5
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 4.3e-101 372.1 331 64.4
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 5.6e-101 371.7 299 65.2
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 7.3e-101 371.3 316 63.3
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.2e-100 370.5 311 63.0
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.2e-100 370.5 312 62.8
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.6e-100 370.2 286 65.0
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 4.7e-100 368.6 316 63.0
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 6.2e-100 368.2 315 63.2
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 8.0e-100 367.9 314 62.7
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.4e-99 367.1 302 63.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.8e-99 366.7 307 63.5
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 5.2e-99 365.2 305 65.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 6.8e-99 364.8 314 62.1
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-98 363.2 307 63.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.0e-98 363.2 307 63.5
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.0e-98 363.2 296 63.2
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.0e-98 363.2 315 63.5
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.6e-98 362.8 312 61.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 9.8e-98 360.9 322 61.2
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.3e-97 360.5 312 61.9
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 8.3e-97 357.8 314 62.1
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.1e-96 357.5 310 61.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.1e-96 357.5 250 70.4
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.9e-96 356.7 307 62.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-96 356.7 305 62.3
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.9e-96 356.7 307 62.5
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.4e-96 356.3 351 57.8
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 3.2e-96 355.9 311 61.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 4.1e-96 355.5 286 64.0
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-95 354.0 309 60.8
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.6e-95 353.6 305 62.0
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 3.5e-95 352.4 305 61.6
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.0e-94 350.9 317 60.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.7e-94 350.1 316 60.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 6.6e-94 348.2 310 61.0
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 1.5e-93 347.1 393 51.4
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 4.3e-93 345.5 307 61.9
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 3.6e-92 342.4 318 58.8
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 8.1e-92 341.3 299 62.5
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.4e-91 340.5 296 63.2
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 4.4e-90 335.5 325 57.8
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 4.1e-88 328.9 313 59.1
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 4.6e-87 325.5 333 57.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 3.9e-86 322.4 315 58.4
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.5e-82 310.5 305 55.7
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.9e-81 305.4 375 50.7
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 6.4e-81 305.1 312 55.4
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-79 300.8 320 57.2
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.0e-78 297.7 290 57.6
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 6.6e-78 295.0 330 53.9
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.5e-77 293.1 248 62.9
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.2e-76 290.8 311 54.3
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 5.4e-72 275.4 307 53.4
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.6e-71 273.9 315 52.1
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 4.6e-71 272.3 315 52.1
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 5.6e-69 265.4 325 51.1
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.8e-62 243.8 172 72.7
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 7.4e-61 238.4 267 51.3
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.8e-59 233.8 167 70.7
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-58 229.9 222 60.4
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.1e-55 220.3 312 45.8
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.6e-55 219.2 182 64.8
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 5.1e-54 215.7 257 51.4
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-48 198.0 149 63.8
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.8e-46 190.7 308 41.9
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-44 184.1 135 73.3
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 4.1e-43 179.5 162 66.0
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-42 177.2 177 58.8
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.6e-42 176.8 179 59.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.2e-36 157.1 161 59.6
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 6.1e-31 139.0 352 35.8
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-28 131.0 135 60.0
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.8e-27 127.5 109 67.0
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 3.4e-26 123.2 316 33.9
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 8.8e-22 108.6 79 64.6
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 5.3e-19 99.4 98 59.2
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.0e-18 97.4 89 58.4
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-17 94.0 74 58.1
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.0e-14 85.1 68 58.8
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 6.7e-14 82.4 60 71.7
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 5.0e-09 66.2 52 59.6
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.5e-08 64.7 52 59.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.7e-07 60.5 43 67.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.3e-06 57.4 38 81.6
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.8e-06 55.5 108 42.6


User provided reference genes

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