Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0723G008 Amborella trichopoda HOM05D000181 ORTHO05D005757 7.5e-158 560.5 280 100.0
ATR0618G289 Amborella trichopoda HOM05D000181 ORTHO05D005757 5.1e-114 414.8 300 74.0
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 1.5e-44 184.1 238 45.4
Nn2g11391 Nelumbo nucifera HOM05D000181 ORTHO05D005757 1.2e-41 174.5 241 43.2
Dinv14464 Davidia involucrata HOM05D000181 ORTHO05D005757 1.5e-41 174.1 236 43.2
TAR633G0153 Trochodendron aralioides HOM05D000181 ORTHO05D005757 1.9e-39 167.2 239 43.1
CSS0008554 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 1.6e-38 164.1 242 42.1
Cpa.g.sc112.54 Carica papaya HOM05D000181 ORTHO05D005757 2.0e-38 163.7 286 39.2
MBI05_g03462_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D005757 2.0e-38 163.7 252 42.9
CDE04G0235 Ceratophyllum demersum HOM05D000181 ORTHO05D005757 3.0e-37 159.8 306 38.9
THA.LOC104810725 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 5.0e-37 159.1 229 45.0
Sc12g0000870 Simmondsia chinensis HOM05D000181 ORTHO05D005757 2.5e-36 156.8 287 40.4
Aqoxy4G02662 Aquilegia oxysepala HOM05D000181 ORTHO05D005757 7.3e-36 155.2 264 40.2
CiPaw.13G080800 Carya illinoinensis HOM05D000181 ORTHO05D005757 1.2e-35 154.5 241 41.9
COL.COLO4_19109 Corchorus olitorius HOM05D000181 ORTHO05D005757 2.1e-35 153.7 231 45.0
Oeu049273.1 Olea europaea HOM05D000181 ORTHO05D005757 6.2e-35 152.1 278 37.4
Carub.0008s1951 Capsella rubella HOM05D000181 ORTHO05D005757 4.0e-34 149.4 232 43.1
CARHR272800 Cardamine hirsuta HOM05D000181 ORTHO05D005757 5.2e-34 149.1 228 40.4
Gohir.A05G089900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 8.9e-34 148.3 263 39.5
Lj2A1078G39 Lonicera japonica HOM05D000181 ORTHO05D005757 2.0e-33 147.1 295 37.3
AL3G40320 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 4.4e-33 146.0 228 43.9
AL8G35200 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 4.4e-33 146.0 228 43.9
Oeu009382.1 Olea europaea HOM05D000181 ORTHO05D005757 4.4e-33 146.0 253 37.2
Thecc.09G305500 Theobroma cacao HOM05D000181 ORTHO05D005757 4.4e-33 146.0 167 50.3
MSTRG.12663 Avicennia marina HOM05D000181 ORTHO05D005757 7.5e-33 145.2 245 37.1
Ciclev10027831m.g Citrus clementina HOM05D000181 ORTHO05D005757 1.3e-32 144.4 163 50.3
Migut.N00882 Erythranthe guttata HOM05D000181 ORTHO05D005757 2.2e-32 143.7 217 39.6
AT5G58870 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 2.9e-32 143.3 226 42.0
CSS0046009 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D005757 3.7e-32 142.9 244 39.8
Duzib150G0876 Durio zibethinus HOM05D000181 ORTHO05D005757 3.7e-32 142.9 308 36.7
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 3.7e-32 142.9 252 38.9
Gohir.A03G049400 Gossypium hirsutum HOM05D000181 ORTHO05D005757 6.4e-32 142.1 287 37.3
Manes.01G164300 Manihot esculenta HOM05D000181 ORTHO05D005757 6.4e-32 142.1 221 43.9
Glyma.14G192100 Glycine max HOM05D000181 ORTHO05D005757 8.3e-32 141.7 211 40.8
Sp6g20570 Schrenkiella parvula HOM05D000181 ORTHO05D005757 8.3e-32 141.7 231 40.3
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 1.1e-31 141.4 220 40.5
SalBow2G0286 Salvia bowleyana HOM05D000181 ORTHO05D005757 1.1e-31 141.4 280 35.4
Gohir.D03G117900 Gossypium hirsutum HOM05D000181 ORTHO05D005757 1.4e-31 141.0 287 37.3
Gorai.003G124400 Gossypium raimondii HOM05D000181 ORTHO05D005757 1.4e-31 141.0 287 37.3
SGA_v2.0_scaffold39G15251 Striga asiatica HOM05D000181 ORTHO05D005757 1.4e-31 141.0 278 35.3
Prupe.6G060800 Prunus persica HOM05D000181 ORTHO05D005757 1.9e-31 140.6 294 36.7
Sp5g14670 Schrenkiella parvula HOM05D000181 ORTHO05D005757 1.9e-31 140.6 224 39.3
CARHR155660 Cardamine hirsuta HOM05D000181 ORTHO05D005757 2.4e-31 140.2 153 50.3
AL5G26300 Arabidopsis lyrata HOM05D000181 ORTHO05D005757 3.2e-31 139.8 153 51.0
Thhalv10010128m.g Eutrema salsugineum HOM05D000181 ORTHO05D005757 3.2e-31 139.8 225 37.3
Gohir.D05G090800 Gossypium hirsutum HOM05D000181 ORTHO05D005757 3.2e-31 139.8 263 39.2
arahy.Tifrunner.gnm1.ann1.ND684V Arachis hypogaea HOM05D000181 ORTHO05D005757 4.1e-31 139.4 168 48.2
Haze_24257 Corylus avellana HOM05D000181 ORTHO05D005757 4.1e-31 139.4 161 49.1
MD03G1074100 Malus domestica HOM05D000181 ORTHO05D005757 4.1e-31 139.4 155 51.0
Sopen06g001920 Solanum pennellii HOM05D000181 ORTHO05D005757 4.1e-31 139.4 213 41.3
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 5.4e-31 139.0 248 38.7
ECA236G3476 Erigeron canadensis HOM05D000181 ORTHO05D005757 7.1e-31 138.7 183 47.0
QL01p026829 Quercus lobata HOM05D000181 ORTHO05D005757 7.1e-31 138.7 155 49.7
Solyc06g005950.3 Solanum lycopersicum HOM05D000181 ORTHO05D005757 7.1e-31 138.7 213 41.3
CAN.G483.1 Capsicum annuum HOM05D000181 ORTHO05D005757 9.2e-31 138.3 223 40.8
DCAR_007391 Daucus carota HOM05D000181 ORTHO05D005757 9.2e-31 138.3 159 50.3
LjContig00155g0009316 Lotus japonicus HOM05D000181 ORTHO05D005757 9.2e-31 138.3 229 41.0
Atru.chr3.4273 Acer truncatum HOM05D000181 ORTHO05D005757 1.2e-30 137.9 155 50.3
Eucgr.B02274 Eucalyptus grandis HOM05D000181 ORTHO05D005757 1.2e-30 137.9 153 49.0
Gorai.009G093300 Gossypium raimondii HOM05D000181 ORTHO05D005757 1.2e-30 137.9 263 38.8
Nitab4.5_0000102g0170 Nicotiana tabacum HOM05D000181 ORTHO05D005757 1.2e-30 137.9 219 39.7
TWI31G1099 Tripterygium wilfordii HOM05D000181 ORTHO05D005757 1.2e-30 137.9 245 37.6
Carub.0005s1330 Capsella rubella HOM05D000181 ORTHO05D005757 1.6e-30 137.5 200 44.0
Cfa011653 Carpinus fangiana HOM05D000181 ORTHO05D005757 1.6e-30 137.5 263 39.2
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 2.7e-30 136.7 231 39.4
Glyma.02G225300 Glycine max HOM05D000181 ORTHO05D005757 2.7e-30 136.7 208 40.9
Sabra09G0030500 Salix brachista HOM05D000181 ORTHO05D005757 3.5e-30 136.3 167 46.7
FvH4_3g38190 Fragaria vesca HOM05D000181 ORTHO05D005757 4.6e-30 136.0 230 39.1
FAN11G0623 Fragaria x ananassa HOM05D000181 ORTHO05D005757 4.6e-30 136.0 230 39.1
FAN25G0837 Fragaria x ananassa HOM05D000181 ORTHO05D005757 4.6e-30 136.0 227 39.6
Sed0008141 Sechium edule HOM05D000181 ORTHO05D005757 4.6e-30 136.0 287 36.2
PSO339G2545 Papaver somniferum HOM05D000181 ORTHO05D005757 7.8e-30 135.2 271 38.0
arahy.Tifrunner.gnm1.ann1.70SKLQ Arachis hypogaea HOM05D000181 ORTHO05D005757 1.3e-29 134.4 250 37.6
CANSAT54G2135 Cannabis sativa HOM05D000181 ORTHO05D005757 1.3e-29 134.4 234 38.5
PSO384G0122 Papaver somniferum HOM05D000181 ORTHO05D005757 1.3e-29 134.4 274 38.3
Cc01_g13940 Coffea canephora HOM05D000181 ORTHO05D005757 1.7e-29 134.0 263 36.5
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 2.3e-29 133.7 255 38.4
Aa31LG1G18900 Aethionema arabicum HOM05D000181 ORTHO05D005757 3.0e-29 133.3 227 39.6
AT3G47060 Arabidopsis thaliana HOM05D000181 ORTHO05D005757 3.0e-29 133.3 153 48.4
Ca_05586_v3 Cicer arietinum L. HOM05D000181 ORTHO05D005757 3.0e-29 133.3 260 35.4
Lalb_Chr10g0103271 Lupinus albus HOM05D000181 ORTHO05D005757 3.0e-29 133.3 157 47.8
Nitab4.5_0001970g0080 Nicotiana tabacum HOM05D000181 ORTHO05D005757 5.1e-29 132.5 219 38.8
HanXRQChr05g0135651 Helianthus annuus HOM05D000181 ORTHO05D005757 6.6e-29 132.1 257 38.5
MD11G1080400 Malus domestica HOM05D000181 ORTHO05D005757 6.6e-29 132.1 281 36.7
Phvul.006G065400 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 6.6e-29 132.1 172 43.6
Potri.009G043100 Populus trichocarpa HOM05D000181 ORTHO05D005757 8.6e-29 131.7 166 45.8
VMungo0540G0029 Vigna mungo HOM05D000002 ORTHO05D005757 8.6e-29 131.7 185 42.2
BraA10t43689Z Brassica rapa HOM05D000181 ORTHO05D005757 1.1e-28 131.3 236 36.4
A10p15460 Brassica napus HOM05D000181 ORTHO05D005757 1.5e-28 131.0 202 41.6
Manes.02G121800 Manihot esculenta HOM05D000181 ORTHO05D005757 1.5e-28 131.0 228 39.9
Ah.08g220730 Amaranthus hybridus HOM05D000181 ORTHO05D005757 1.9e-28 130.6 179 43.6
C09p51030 Brassica napus HOM05D000181 ORTHO05D005757 1.9e-28 130.6 239 38.1
BolC9t57960H Brassica oleracea HOM05D000181 ORTHO05D005757 1.9e-28 130.6 239 36.0
CsaV3_1G036040 Cucumis sativus L. HOM05D000181 ORTHO05D005757 1.9e-28 130.6 297 36.0
A06p20470 Brassica napus HOM05D000181 ORTHO05D005757 2.5e-28 130.2 156 48.7
BraA06t25122Z Brassica rapa HOM05D000181 ORTHO05D005757 2.5e-28 130.2 156 48.7
HanXRQChr06g0179431 Helianthus annuus HOM05D000181 ORTHO05D005757 3.3e-28 129.8 146 49.3
RcHm_v2.0_Chr5g0068621 Rosa chinensis HOM05D000181 ORTHO05D005757 3.3e-28 129.8 291 36.1
EL10Ac7g16127 Beta vulgaris HOM05D000181 ORTHO05D005757 4.3e-28 129.4 168 47.0
AUR62001684 Chenopodium quinoa HOM05D000181 ORTHO05D005757 4.3e-28 129.4 290 35.9
ClCG03G000890 Citrullus lanatus HOM05D000181 ORTHO05D005757 4.3e-28 129.4 287 35.5
Sabra16G0151200 Salix brachista HOM05D000181 ORTHO05D005757 4.3e-28 129.4 214 39.3
unitig_8.g3694 Utricularia gibba HOM05D000181 ORTHO05D005757 5.6e-28 129.0 251 33.1
Glyma.18G065600 Glycine max HOM05D000181 ORTHO05D005757 7.3e-28 128.6 156 44.2
Lalb_Chr04g0252331 Lupinus albus HOM05D000181 ORTHO05D005757 7.3e-28 128.6 157 45.2
Phvul.008G262300 Phaseolus vulgaris HOM05D000181 ORTHO05D005757 7.3e-28 128.6 217 36.4
THA.LOC104814906 Tarenaya hassleriana HOM05D000181 ORTHO05D005757 7.3e-28 128.6 153 47.7
C03p71290 Brassica napus HOM05D000181 ORTHO05D005757 1.2e-27 127.9 223 38.1
BcaC01g01859 Brassica carinata HOM05D000181 ORTHO05D005757 1.6e-27 127.5 223 38.1
BcaC04g19854 Brassica carinata HOM05D000181 ORTHO05D005757 1.6e-27 127.5 239 36.8
BolC3t19414H Brassica oleracea HOM05D000181 ORTHO05D005757 2.1e-27 127.1 223 37.7
Lj6g0028119 Lotus japonicus HOM05D000181 ORTHO05D005757 4.7e-27 125.9 226 40.7
SEGI_03564 Sequoiadendron giganteum HOM05D000181 ORTHO05D005757 6.2e-27 125.6 201 40.8
Potri.001G249100 Populus trichocarpa HOM05D000181 ORTHO05D005757 8.1e-27 125.2 217 39.2
Peaxi162Scf00216g00037 Petunia axillaris HOM05D000181 ORTHO05D005757 4.0e-26 122.9 206 41.3
CiPaw.14G061100 Carya illinoinensis HOM05D000181 ORTHO05D005757 6.8e-26 122.1 241 37.3
Ca_14910_v3 Cicer arietinum L. HOM05D000181 ORTHO05D005757 8.9e-26 121.7 274 34.7
VMungo0647G2397 Vigna mungo HOM05D000181 ORTHO05D005757 7.6e-25 118.6 217 35.0
Medtr3g462930 Medicago truncatula HOM05D000181 ORTHO05D005757 1.3e-24 117.9 145 42.8
Rhsim13G0072100 Rhododendron simsii HOM05D000181 ORTHO05D005757 1.3e-24 117.9 162 42.6
Hund04887 Selenicereus undatus HOM05D000181 ORTHO05D005757 2.2e-24 117.1 210 37.1
Psat5g162280 Pisum sativum HOM05D000181 ORTHO05D005757 2.9e-24 116.7 204 37.7
DCAR_005895 Daucus carota HOM05D000181 ORTHO05D005757 6.4e-24 115.5 214 37.4
Psat1g066520 Pisum sativum HOM05D000181 ORTHO05D005757 1.2e-22 111.3 146 45.9
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 7.8e-22 108.6 126 48.4
Medtr5g069780 Medicago truncatula HOM05D000181 ORTHO05D005757 2.3e-21 107.1 260 33.5
Zm00001eb186240 Zea mays HOM05D000181 ORTHO05D005757 5.1e-21 105.9 167 38.9
Os02g0649700 Oryza sativa ssp. japonica HOM05D000181 ORTHO05D005757 8.6e-21 105.1 166 37.3
Zm00001eb248950 Zea mays HOM05D000181 ORTHO05D005757 1.9e-20 104.0 149 39.6
Lsat_1_v5_gn_8_71240 Lactuca sativa HOM05D000181 ORTHO05D005757 2.1e-19 100.5 128 46.9
TPR.G24052 Trifolium pratense HOM05D000181 ORTHO05D005757 6.2e-19 99.0 158 39.2
vmacro02988 Vaccinium macrocarpon HOM05D000181 ORTHO05D005757 3.1e-18 96.7 266 30.5
TPR.G13266 Trifolium pratense HOM05D000181 ORTHO05D005757 8.9e-18 95.1 133 42.1
AUR62020098 Chenopodium quinoa HOM05D000181 ORTHO05D005757 2.0e-17 94.0 141 42.6
Nn2g13621 Nelumbo nucifera HOM05D000181 ORTHO05D005757 1.3e-16 91.3 146 38.4
PGSC0003DMG400004149 Solanum tuberosum HOM05D000181 ORTHO05D005757 3.5e-14 83.2 103 48.5
Pp3c23_7140 Physcomitrium patens HOM05D000181 ORTHO05D005757 2.8e-11 73.6 173 35.3
Pp3c23_7144 Physcomitrium patens HOM05D000181 ORTHO05D005757 2.8e-11 73.6 173 35.3
Ah.04g150050 Amaranthus hybridus HOM05D000181 ORTHO05D005757 1.1e-10 71.6 65 56.9
Mapoly0001s0318 Marchantia polymorpha HOM05D000181 ORTHO05D005757 1.8e-10 70.9 224 28.6
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 1.8e-10 70.9 252 29.0
SHI05882 Sapria himalayana HOM05D000181 ORTHO05D005757 3.1e-10 70.1 196 30.1
SMO351G0531 Selaginella moellendorffii HOM05D000181 ORTHO05D005757 6.4e-08 62.4 187 29.4
AagrBONN_evm.TU.Sc2ySwM_228.748 Anthoceros agrestis HOM05D000181 ORTHO05D005757 1.6e-06 57.8 182 27.5
Dinv04672 Davidia involucrata HOM05D000181 ORTHO05D005757 1.6e-06 57.8 46 69.6
CBR_g26107 Chara braunii HOM05D000181 ORTHO05D005757 6.0e-06 55.8 196 27.0


User provided reference genes

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