Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 4.2e-158 561.2 267 100.0
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.6e-109 399.8 262 71.8
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.2e-109 397.9 262 69.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.3e-106 390.2 260 66.2
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 1.9e-105 386.3 261 65.5
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.0e-105 384.4 257 67.3
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.6e-104 383.3 262 65.3
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.7e-104 382.5 262 66.4
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.0e-103 380.6 248 68.1
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.0e-103 380.6 248 68.1
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.7e-103 379.8 260 64.2
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.3e-103 379.4 260 67.3
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.0e-103 379.0 258 65.5
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.0e-103 378.3 260 67.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 8.6e-103 377.5 261 64.4
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.5e-102 375.9 262 64.1
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.5e-102 375.9 257 67.3
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 5.6e-102 374.8 258 65.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 7.3e-102 374.4 263 66.2
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 9.5e-102 374.0 256 66.8
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.6e-101 373.2 251 64.9
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.1e-101 372.9 260 64.2
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.8e-101 372.5 262 64.1
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-100 370.5 259 65.6
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.8e-100 369.8 259 65.6
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 5.2e-100 368.2 259 64.9
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.2e-99 367.1 256 65.6
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 2.6e-99 365.9 255 65.1
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.6e-99 365.9 278 61.2
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 3.4e-99 365.5 256 66.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 5.8e-99 364.8 259 64.1
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.5e-99 364.4 257 64.6
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 7.5e-99 364.4 261 62.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.9e-97 359.8 261 62.8
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.9e-97 359.8 261 63.6
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.9e-97 359.8 259 65.3
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 2.4e-97 359.4 256 66.4
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.2e-97 359.0 261 62.8
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.1e-97 358.6 257 64.2
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.4e-97 358.2 247 66.0
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 7.1e-97 357.8 261 62.8
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 2.1e-96 356.3 262 60.3
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.7e-96 355.9 257 61.5
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 3.5e-96 355.5 257 62.6
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 4.6e-96 355.1 262 60.7
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 6.0e-96 354.8 256 62.5
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.0e-95 352.4 261 62.5
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 6.6e-95 351.3 263 63.5
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 8.6e-95 350.9 257 61.1
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 3.3e-94 349.0 261 62.8
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.2e-93 347.1 261 63.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.6e-93 346.7 253 63.2
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 8.1e-93 344.4 257 61.5
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.1e-92 344.0 257 61.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.1e-92 344.0 223 68.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.4e-92 343.6 257 61.1
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.4e-92 343.6 257 60.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.8e-92 343.2 256 60.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.8e-92 343.2 262 63.4
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.8e-92 343.2 257 59.9
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 3.1e-92 342.4 257 61.1
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 8.9e-92 340.9 260 60.8
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.2e-91 340.5 257 60.7
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.5e-91 340.1 257 60.7
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 3.4e-91 339.0 257 59.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 3.4e-91 339.0 257 59.9
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 5.8e-91 338.2 257 60.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 7.6e-91 337.8 247 62.3
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 9.9e-91 337.4 257 59.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-90 337.0 257 60.7
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.7e-90 336.7 257 59.1
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.7e-90 336.7 257 60.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.7e-90 336.7 257 60.7
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.2e-90 336.3 257 60.3
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 6.4e-90 334.7 257 59.9
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.1e-89 334.0 257 59.5
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.1e-89 334.0 247 61.5
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 3.2e-89 332.4 257 59.1
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.4e-89 331.6 257 59.1
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 7.1e-89 331.3 257 59.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 3.5e-88 328.9 257 59.1
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.1e-85 319.7 217 65.9
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 4.0e-84 315.5 257 58.4
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.5e-83 313.5 278 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.4e-81 307.0 262 53.4
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 7.8e-80 301.2 237 58.6
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.5e-78 297.0 255 51.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.5e-78 296.2 233 58.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.1e-77 293.1 198 67.7
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.8e-76 290.0 259 55.6
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.2e-75 287.3 259 55.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 9.9e-75 284.3 217 60.8
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.7e-74 283.5 190 66.8
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.7e-74 283.5 255 51.8
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.9e-74 282.7 258 49.2
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.8e-74 282.3 257 53.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 1.3e-71 273.9 188 66.5
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.1e-70 270.8 188 64.9
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.6e-69 265.8 200 60.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.8e-68 263.5 257 50.6
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 6.9e-68 261.5 167 70.1
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 4.5e-67 258.8 252 52.0
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.9e-65 253.4 214 57.9
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 3.5e-64 249.2 183 62.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 2.8e-61 239.6 261 46.4
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-59 234.2 153 66.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 9.3e-57 224.6 154 64.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.9e-55 219.2 244 51.6
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.8e-53 213.0 244 50.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.9e-52 208.4 180 56.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-49 200.7 148 60.1
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.2e-49 198.4 157 58.0
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.4e-43 179.5 127 63.0
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.3e-42 177.6 216 36.6
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 7.2e-41 171.8 213 42.7
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.7e-38 162.2 195 46.7
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.7e-37 160.6 229 41.9
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.0e-35 153.7 113 61.1
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 7.7e-35 151.8 148 50.7
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.2e-34 150.2 105 64.8
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 3.7e-29 132.9 113 55.8
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.4e-28 130.2 211 34.1
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.1e-28 129.4 79 70.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 3.8e-26 122.9 103 55.3
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.5e-25 120.2 101 55.4
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.2e-24 117.9 111 52.3
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.0e-18 95.9 76 56.6
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.7e-16 90.1 67 56.7
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 3.0e-15 86.7 73 57.5
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.4e-12 77.8 77 54.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.2e-10 70.5 85 44.7


User provided reference genes

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