Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 0.0e+00 1442.2 724 100.0
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 7.3e-298 1026.9 727 70.2
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 8.7e-291 1003.4 730 68.1
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 4.2e-285 984.6 728 66.6
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.3e-285 983.4 728 66.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 9.3e-285 983.4 727 66.4
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.9e-282 975.7 729 65.7
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 4.5e-279 964.5 722 65.7
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 6.4e-278 960.7 719 65.5
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 1.9e-277 959.1 730 65.3
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 4.2e-277 958.0 731 66.1
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 7.1e-277 957.2 724 63.8
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 3.5e-276 954.9 724 64.4
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 7.9e-276 953.7 717 65.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 5.1e-275 951.0 736 63.2
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 6.7e-275 950.7 726 65.0
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 8.7e-275 950.3 730 63.8
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 3.3e-274 948.3 728 64.4
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.6e-273 946.0 727 64.4
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 2.1e-273 945.7 727 64.0
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 4.8e-273 944.5 728 64.8
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.4e-272 942.2 730 64.8
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.1e-272 941.8 727 64.9
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 7.6e-271 937.2 666 69.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 2.9e-270 935.3 728 63.7
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.9e-269 932.6 727 64.2
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 1.2e-268 929.9 730 64.9
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 3.9e-267 924.9 729 64.3
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 8.7e-267 923.7 727 62.7
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 7.4e-266 920.6 738 62.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 2.2e-265 919.1 713 63.8
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.4e-264 916.4 715 63.2
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.8e-264 916.0 715 62.9
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.8e-264 916.0 730 63.7
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.1e-264 915.2 714 64.1
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 3.1e-264 915.2 722 62.9
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 4.1e-264 914.8 724 62.8
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.2e-263 913.3 728 61.4
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.0e-263 912.5 717 62.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 3.8e-262 908.3 713 64.0
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-261 906.7 714 63.6
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.4e-261 906.4 728 61.1
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 6.1e-260 901.0 727 61.1
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 7.9e-260 900.6 730 61.0
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.8e-259 899.4 730 61.4
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 1.5e-258 896.3 726 60.7
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.5e-258 896.3 735 62.6
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 2.0e-258 896.0 730 60.5
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 3.3e-258 895.2 726 61.3
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 4.3e-258 894.8 716 64.5
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 4.3e-258 894.8 725 61.1
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.3e-257 893.3 731 61.6
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 2.2e-257 892.5 734 60.4
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 2.4e-256 889.0 726 60.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 4.1e-256 888.3 726 60.1
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 6.9e-256 887.5 714 59.9
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 9.1e-256 887.1 714 59.9
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.2e-255 886.7 731 59.4
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 5.9e-255 884.4 726 59.2
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.7e-254 882.9 714 60.2
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.7e-254 882.9 729 59.7
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.7e-254 882.9 729 60.5
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 5.0e-254 881.3 714 59.9
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 8.5e-254 880.6 730 61.1
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 1.9e-253 879.4 714 60.2
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.1e-252 875.9 729 59.8
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.8e-251 872.8 726 59.6
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 2.3e-251 872.5 639 66.2
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 1.5e-250 869.8 727 59.0
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 9.1e-248 860.5 743 59.5
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.2e-247 860.1 730 59.0
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 5.9e-247 857.8 731 58.8
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.7e-246 856.3 745 58.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 3.8e-246 855.1 725 58.8
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.5e-245 853.2 725 58.9
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.2e-244 850.1 727 59.0
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.7e-244 849.0 675 61.8
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.1e-242 843.6 739 57.4
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.3e-240 834.7 724 60.1
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.2e-239 833.6 737 57.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 2.2e-238 829.3 702 61.1
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 6.5e-238 827.8 633 63.7
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 8.5e-238 827.4 597 66.8
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.1e-236 822.8 995 47.7
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 8.0e-236 820.8 643 64.1
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 4.0e-235 818.5 732 56.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.2e-235 818.1 597 66.0
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.2e-234 817.0 649 62.2
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 3.7e-233 812.0 550 70.7
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 5.5e-229 798.1 729 56.4
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 6.8e-227 791.2 585 65.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 8.3e-217 757.7 610 61.1
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.6e-215 753.4 886 47.7
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.0e-214 748.4 729 54.2
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 7.5e-202 708.0 989 44.5
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 2.1e-196 689.9 725 50.5
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 7.1e-192 674.9 717 52.0
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.1e-179 634.4 457 66.5
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 5.6e-173 612.1 702 46.7
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 8.1e-164 581.6 643 48.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.0e-161 574.7 484 60.3
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.7e-145 520.8 372 67.7
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.9e-122 442.6 443 53.0
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 4.0e-118 429.9 365 56.7
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 3.9e-97 360.1 279 59.9
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 1.3e-84 318.5 234 67.9
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 2.1e-82 311.2 262 58.8
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 9.2e-75 285.8 299 50.8
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 2.5e-72 277.7 260 55.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.1e-58 231.5 175 68.0
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 3.5e-58 230.7 149 66.4
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.3e-52 212.2 271 44.6
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.0e-46 189.5 253 43.9
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 6.0e-42 176.8 207 47.8
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.5e-40 171.4 253 41.5
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 6.9e-38 163.3 154 57.1
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 8.7e-33 146.4 181 45.9
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.9e-32 145.2 114 61.4
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.5e-27 128.3 98 62.2
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 7.2e-27 126.7 107 61.7
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-26 125.6 169 41.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 3.3e-24 117.9 82 64.6
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 4.4e-24 117.5 82 64.6
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 5.7e-24 117.1 85 62.4
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 2.2e-20 105.1 72 68.1
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 8.5e-20 103.2 109 50.5
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 3.2e-19 101.3 126 46.0
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 9.4e-19 99.8 75 68.0
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 3.6e-18 97.8 76 61.8
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 6.1e-18 97.1 102 50.0
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 3.0e-17 94.7 624 22.1
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 6.7e-17 93.6 69 63.8
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 8.8e-17 93.2 109 47.7
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 2.6e-16 91.7 109 46.8
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-15 89.4 260 29.2
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.2e-15 88.6 164 34.8
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.2e-15 88.6 66 57.6
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.8e-15 87.4 75 54.7
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.8e-14 85.5 52 69.2
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 9.1e-14 83.2 65 63.1
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 5.9e-13 80.5 76 53.9
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.7e-12 79.0 57 64.9
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 1.1e-11 76.3 55 63.6
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.5e-11 75.9 54 63.0
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.5e-11 75.9 70 55.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 7.2e-11 73.6 57 63.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 7.2e-11 73.6 57 63.2
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 2.1e-10 72.0 129 35.7
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 1.4e-09 69.3 57 59.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 8.8e-09 66.6 71 53.5
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 3.3e-08 64.7 42 69.0
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.4e-06 59.3 72 45.8


User provided reference genes

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