Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G354 Amborella trichopoda HOM05D007256 ORTHO05D009109 2.8e-69 265.0 120 100.0
GSVIVG01031300001 Vitis vinifera HOM05D007256 ORTHO05D009109 3.5e-35 151.8 119 58.0
Nn4g25434 Nelumbo nucifera HOM05D007256 ORTHO05D009109 2.2e-34 149.1 119 56.3
Aqoxy2G02591 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 2.5e-33 145.6 117 59.0
CANSAT54G0501 Cannabis sativa HOM05D007256 ORTHO05D009109 5.5e-33 144.4 117 56.4
TAR362G0938 Trochodendron aralioides HOM05D007256 ORTHO05D009109 5.5e-33 144.4 118 55.9
PSO210G0513 Papaver somniferum HOM05D007256 ORTHO05D009109 9.4e-33 143.7 110 60.0
Prupe.6G307100 Prunus persica HOM05D007256 ORTHO05D009109 1.0e-31 140.2 115 54.8
PSO761G0366 Papaver somniferum HOM05D007256 ORTHO05D009109 1.8e-31 139.4 110 59.1
Solyc01g100990.3 Solanum lycopersicum HOM05D007256 ORTHO05D009109 5.2e-31 137.9 120 56.7
Eucgr.B01795 Eucalyptus grandis HOM05D007256 ORTHO05D009109 8.8e-31 137.1 116 56.0
Sopen01g044450 Solanum pennellii HOM05D007256 ORTHO05D009109 1.1e-30 136.7 120 56.7
Haze_04019 Corylus avellana HOM05D007256 ORTHO05D009109 9.7e-30 133.7 116 54.3
Nitab4.5_0002783g0030 Nicotiana tabacum HOM05D007256 ORTHO05D009109 9.7e-30 133.7 80 70.0
Nitab4.5_0005710g0050 Nicotiana tabacum HOM05D007256 ORTHO05D009109 9.7e-30 133.7 80 70.0
QL03p009202 Quercus lobata HOM05D007256 ORTHO05D009109 1.3e-29 133.3 120 53.3
QL03p009011 Quercus lobata HOM05D007256 ORTHO05D009109 2.2e-29 132.5 123 52.8
CiPaw.07G034000 Carya illinoinensis HOM05D007256 ORTHO05D009109 3.7e-29 131.7 81 67.9
FAN09G0386 Fragaria x ananassa HOM05D007256 ORTHO05D009109 3.7e-29 131.7 115 53.9
RcHm_v2.0_Chr3g0458031 Rosa chinensis HOM05D007256 ORTHO05D009109 3.7e-29 131.7 114 54.4
Cfa006739 Carpinus fangiana HOM05D007256 ORTHO05D009109 6.3e-29 131.0 81 66.7
CAN.G1374.8 Capsicum annuum HOM05D007256 ORTHO05D009109 8.2e-29 130.6 80 67.5
CDE08G0276 Ceratophyllum demersum HOM05D007256 ORTHO05D009109 1.4e-28 129.8 83 66.3
Oeu060662.1 Olea europaea HOM05D007256 ORTHO05D009109 1.8e-28 129.4 82 65.9
PGSC0003DMG400002748 Solanum tuberosum HOM05D007256 ORTHO05D009109 1.8e-28 129.4 80 67.5
FAN02G0906 Fragaria x ananassa HOM05D007256 ORTHO05D009109 2.4e-28 129.0 115 53.0
FAN14G3866 Fragaria x ananassa HOM05D007256 ORTHO05D009109 4.1e-28 128.3 79 67.1
Hund07289 Selenicereus undatus HOM05D007256 ORTHO05D009109 4.1e-28 128.3 102 55.9
Sc09g0002500 Simmondsia chinensis HOM05D007256 ORTHO05D009109 7.0e-28 127.5 107 56.1
Zm00001eb333750 Zea mays HOM05D007256 ORTHO05D009109 2.0e-27 125.9 121 52.9
FvH4_6g08160 Fragaria vesca HOM05D007256 ORTHO05D009109 2.6e-27 125.6 115 52.2
ClCG03G017800 Citrullus lanatus HOM05D007256 ORTHO05D009109 1.0e-26 123.6 77 68.8
Peaxi162Scf00357g00431 Petunia axillaris HOM05D007256 ORTHO05D009109 1.0e-26 123.6 116 51.7
Ciclev10012993m.g Citrus clementina HOM05D007256 ORTHO05D009109 1.3e-26 123.2 79 63.3
Manes.08G108700 Manihot esculenta HOM05D007256 ORTHO05D009109 3.8e-26 121.7 126 50.0
Hma1.2p1_0052F.1_g030520 Hydrangea macrophylla HOM05D007256 ORTHO05D009109 6.5e-26 120.9 93 57.0
Lsat_1_v5_gn_2_17440 Lactuca sativa HOM05D007256 ORTHO05D009109 6.5e-26 120.9 78 65.4
Cc02_g35540 Coffea canephora HOM05D007256 ORTHO05D009109 8.5e-26 120.6 91 62.6
HanXRQChr14g0433581 Helianthus annuus HOM05D007256 ORTHO05D009109 1.1e-25 120.2 119 50.4
COL.COLO4_05498 Corchorus olitorius HOM05D007256 ORTHO05D009109 1.5e-25 119.8 95 57.9
Duzib177G1002 Durio zibethinus HOM05D007256 ORTHO05D009109 1.5e-25 119.8 126 46.0
QL03p009259 Quercus lobata HOM05D007256 ORTHO05D009109 1.9e-25 119.4 123 50.4
MELO3C015247.2 Cucumis melo HOM05D000487 ORTHO05D000405 2.5e-25 119.0 81 64.2
Duzib177G0019 Durio zibethinus HOM05D007256 ORTHO05D009109 2.5e-25 119.0 82 61.0
ECA238G0534 Erigeron canadensis HOM05D007256 ORTHO05D009109 2.5e-25 119.0 123 48.0
Migut.B00859 Erythranthe guttata HOM05D007256 ORTHO05D009109 3.2e-25 118.6 83 62.7
Thecc.05G327400 Theobroma cacao HOM05D007256 ORTHO05D009109 4.2e-25 118.2 95 54.7
Gohir.D13G028200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 9.4e-25 117.1 110 50.9
Gorai.013G032200 Gossypium raimondii HOM05D007256 ORTHO05D009109 9.4e-25 117.1 110 50.9
CsaV3_1G037970 Cucumis sativus L. HOM05D007256 ORTHO05D009109 1.6e-24 116.3 110 52.7
Gohir.A13G030200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 2.1e-24 115.9 79 63.3
Atru.chr12.1603 Acer truncatum HOM05D007256 ORTHO05D009109 2.7e-24 115.5 77 63.6
MD12G1202300 Malus domestica HOM05D007256 ORTHO05D009109 2.7e-24 115.5 112 47.3
MSTRG.20366 Avicennia marina HOM05D007256 ORTHO05D009109 3.6e-24 115.2 85 57.6
EL10Ac4g09530 Beta vulgaris HOM05D007256 ORTHO05D009109 4.7e-24 114.8 88 55.7
Potri.013G004801 Populus trichocarpa HOM05D007256 ORTHO05D009109 6.1e-24 114.4 123 48.0
SGA_v2.0_scaffold438G51636 Striga asiatica HOM05D007256 ORTHO05D009109 6.1e-24 114.4 85 57.6
Glyma.10G144700 Glycine max HOM05D007256 ORTHO05D009109 1.8e-23 112.8 105 50.5
Os01g0252200 Oryza sativa ssp. japonica HOM05D007256 ORTHO05D009109 1.8e-23 112.8 91 53.8
DCAR_002110 Daucus carota HOM05D007256 ORTHO05D009109 2.3e-23 112.5 115 50.4
THA.LOC104821748 Tarenaya hassleriana HOM05D007256 ORTHO05D009109 2.3e-23 112.5 114 46.5
Phvul.007G203900 Phaseolus vulgaris HOM05D007256 ORTHO05D009109 4.0e-23 111.7 98 54.1
Sabra13G0003900 Salix brachista HOM05D007256 ORTHO05D009109 5.2e-23 111.3 124 45.2
AUR62006795 Chenopodium quinoa HOM05D007256 ORTHO05D009109 6.7e-23 110.9 116 47.4
SEGI_23053 Sequoiadendron giganteum HOM05D007256 ORTHO05D009109 2.0e-22 109.4 117 48.7
TWI12G0874 Tripterygium wilfordii HOM05D007256 ORTHO05D009109 3.3e-22 108.6 127 48.0
SalBow7G1589 Salvia bowleyana HOM05D007256 ORTHO05D009109 4.4e-22 108.2 138 43.5
Aa31LG11G9900 Aethionema arabicum HOM05D007256 ORTHO05D009109 7.5e-22 107.5 93 53.8
HPP92_001218 Vanilla planifolia HOM05D007256 ORTHO05D009109 9.7e-22 107.1 75 62.7
VMungo0720G0365 Vigna mungo HOM05D007256 ORTHO05D009109 9.7e-22 107.1 81 58.0
Thhalv10005088m.g Eutrema salsugineum HOM05D007256 ORTHO05D009109 2.2e-21 105.9 117 43.6
Sed0013353 Sechium edule HOM05D007256 ORTHO05D009109 4.8e-21 104.8 78 60.3
Lalb_Chr02g0147641 Lupinus albus HOM05D007256 ORTHO05D009109 6.3e-21 104.4 76 59.2
Sp2g21240 Schrenkiella parvula HOM05D007256 ORTHO05D009109 1.4e-20 103.2 96 50.0
TPR.G2616 Trifolium pratense HOM05D007256 ORTHO05D009109 1.4e-20 103.2 92 48.9
BcaB04g19715 Brassica carinata HOM05D007256 ORTHO05D009109 2.4e-20 102.4 118 43.2
BcaC04g23634 Brassica carinata HOM05D007256 ORTHO05D009109 3.1e-20 102.1 116 44.8
C09p06290 Brassica napus HOM05D007256 ORTHO05D009109 3.1e-20 102.1 116 44.8
Carub.0006s2440 Capsella rubella HOM05D007256 ORTHO05D009109 3.1e-20 102.1 115 42.6
AL6G38610 Arabidopsis lyrata HOM05D007256 ORTHO05D009109 5.3e-20 101.3 118 44.9
A09p05700 Brassica napus HOM05D007256 ORTHO05D009109 7.0e-20 100.9 119 42.9
arahy.Tifrunner.gnm1.ann1.Q851GZ Arachis hypogaea HOM05D007256 ORTHO05D009109 9.1e-20 100.5 105 46.7
Ca_10190_v3 Cicer arietinum L. HOM05D007256 ORTHO05D009109 9.1e-20 100.5 78 52.6
Lj5g0000046 Lotus japonicus HOM05D007256 ORTHO05D009109 1.2e-19 100.1 115 40.9
Medtr1g084750 Medicago truncatula HOM05D007256 ORTHO05D009109 1.2e-19 100.1 109 46.8
Psat1g134200 Pisum sativum HOM05D007256 ORTHO05D009109 1.2e-19 100.1 118 42.4
unitig_699.g19800 Utricularia gibba HOM05D007256 ORTHO05D009109 1.2e-19 100.1 131 43.5
arahy.Tifrunner.gnm1.ann1.H7RZSB Arachis hypogaea HOM05D007256 ORTHO05D009109 1.6e-19 99.8 104 45.2
Pp3c18_1910 Physcomitrium patens HOM05D007256 ORTHO05D009109 1.6e-19 99.8 105 47.6
Mapoly0054s0011 Marchantia polymorpha HOM05D007256 ORTHO05D009109 2.7e-19 99.0 77 54.5
Gorai.001G184000 Gossypium raimondii HOM05D007256 ORTHO05D009109 1.7e-18 96.3 77 58.4
Cpa.g.sc48.207 Carica papaya HOM05D007256 ORTHO05D009109 2.5e-17 92.4 64 65.6
BraA09t36210Z Brassica rapa HOM05D007256 ORTHO05D009109 7.2e-17 90.9 136 37.5
Rhsim05G0121300 Rhododendron simsii HOM05D007256 ORTHO05D009109 9.4e-17 90.5 70 55.7
Ah.10g027130 Amaranthus hybridus HOM05D007256 ORTHO05D009109 2.1e-16 89.4 69 56.5
TPR.G2644 Trifolium pratense HOM05D007256 ORTHO05D009109 2.1e-16 89.4 80 51.2
BolC9t53549H Brassica oleracea HOM05D007256 ORTHO05D009109 6.1e-16 87.8 134 38.8
HPP92_001189 Vanilla planifolia HOM05D007256 ORTHO05D009109 1.2e-14 83.6 46 73.9
Aqoxy4G00797 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 3.1e-12 75.5 44 79.5
SHI06526 Sapria himalayana HOM05D007256 ORTHO05D009109 3.1e-12 75.5 43 69.8
AT5G26749 Arabidopsis thaliana HOM05D007256 ORTHO05D009109 5.4e-12 74.7 64 54.7
vmacro19770 Vaccinium macrocarpon HOM05D007256 ORTHO05D009109 5.4e-12 74.7 39 82.1
CARHR186830 Cardamine hirsuta HOM05D007256 ORTHO05D009109 3.5e-11 72.0 44 70.5
FAN05G3272 Fragaria x ananassa HOM05D000487 ORTHO05D000405 2.5e-09 65.9 72 45.8
Gohir.D01G148000 Gossypium hirsutum HOM05D002544 ORTHO05D009109 1.8e-07 59.7 71 45.1
Glyma.20G093702 Glycine max HOM05D007256 ORTHO05D009109 1.5e-06 56.6 64 45.3
Gohir.D01G139700 Gossypium hirsutum HOM05D007256 ORTHO05D009109 4.4e-06 55.1 83 37.3


User provided reference genes

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