Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1687.5 825 100.0
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1247.3 825 74.1
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1226.8 835 73.1
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1225.3 830 73.1
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1219.1 828 71.6
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1216.4 833 71.9
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1215.3 830 71.3
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1214.5 829 71.2
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1214.5 832 71.6
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1211.1 818 72.2
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1210.3 829 71.7
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1208.4 829 70.9
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1207.6 832 71.6
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1206.4 832 71.0
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1206.0 836 71.2
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1206.0 830 70.8
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1206.0 833 70.7
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1204.9 840 70.5
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1204.1 833 71.1
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1203.3 832 70.6
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1202.6 832 70.7
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1201.4 835 70.1
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1201.0 830 70.5
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1198.0 834 69.5
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1197.6 817 72.2
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1197.2 835 71.1
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1196.4 853 69.6
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1196.0 834 70.6
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1195.3 829 70.1
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1195.3 819 71.2
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1194.9 827 70.0
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1193.7 817 71.2
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1193.3 830 70.7
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1191.0 829 70.3
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1189.5 830 70.0
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1188.7 832 70.6
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1185.6 826 69.6
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1184.9 826 70.0
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1184.5 828 69.9
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1184.5 830 69.9
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1179.9 826 69.4
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1179.9 817 71.0
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1179.1 826 69.7
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1175.6 814 70.5
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1175.6 831 68.6
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1173.7 830 69.3
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1173.7 831 69.1
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1173.3 824 69.7
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1173.3 831 67.7
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1172.9 821 69.5
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1172.9 831 69.0
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1172.5 829 69.6
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1172.1 832 69.2
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1171.8 827 69.4
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1171.4 830 69.0
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1171.0 826 69.6
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1170.2 835 68.6
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1169.1 837 69.1
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1167.9 835 68.3
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1167.5 838 68.3
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1167.1 837 68.7
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1166.4 832 69.0
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1166.0 830 68.7
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1165.6 826 68.8
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1164.8 830 68.9
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1164.4 824 69.7
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1164.1 824 69.7
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1163.7 836 68.4
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1162.9 830 68.7
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1161.7 827 69.2
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1159.4 789 72.1
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1158.3 810 70.2
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1154.8 819 69.2
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1154.8 829 68.8
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1154.4 830 68.4
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1153.3 823 68.3
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1152.5 860 66.5
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1152.1 829 68.2
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1151.7 830 68.4
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1151.3 831 67.7
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1151.0 812 69.3
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1147.9 829 69.2
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1146.0 832 67.7
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1144.4 820 69.1
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1142.5 867 65.4
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1123.2 776 71.3
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1100.1 837 66.9
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 0.0e+00 1095.1 802 68.6
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1094.7 835 66.5
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1091.6 830 65.4
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1080.1 835 65.6
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 2.8e-311 1071.6 843 63.7
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 7.3e-310 1067.0 839 65.0
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 2.1e-301 1038.9 827 61.4
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 8.1e-301 1036.9 831 61.3
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 5.4e-297 1024.2 842 63.4
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 8.1e-293 1010.4 722 67.9
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 2.4e-289 998.8 833 59.9
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 1.4e-273 946.4 825 56.8
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 1.5e-270 936.4 845 59.5
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 3.1e-268 928.7 822 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 3.5e-256 888.6 732 59.8
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 8.2e-253 877.5 849 54.7
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 1.4e-244 850.1 937 50.3
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 9.1e-228 794.3 586 65.2
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 2.7e-227 792.7 617 63.7
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 2.3e-215 753.1 956 46.1
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 1.0e-210 737.6 572 62.9
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 5.0e-210 735.3 569 63.1
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 6.2e-200 701.8 486 72.0
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 7.5e-198 694.9 489 71.4
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 2.9e-197 693.0 492 68.9
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 8.3e-189 664.8 459 71.5
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 1.1e-180 637.9 795 44.2
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 6.9e-151 538.9 383 67.1
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 5.7e-137 492.7 624 48.4
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 6.1e-131 472.6 416 57.7
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 2.1e-123 447.6 427 54.6
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 2.3e-122 444.1 424 60.4
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 1.4e-106 391.7 291 64.6
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 5.7e-105 386.3 431 47.6
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 2.1e-99 367.9 413 45.8
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 8.8e-98 362.5 223 82.1
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 1.5e-89 335.1 233 70.8
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 2.8e-83 314.3 190 80.0
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 3.3e-76 290.8 170 87.1
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 8.9e-74 282.7 322 49.7
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 5.4e-63 246.9 169 69.8
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 1.4e-58 232.3 251 48.2
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 3.0e-53 214.5 157 69.4
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 7.6e-49 199.9 356 36.0
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 2.3e-45 188.3 133 72.2
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 4.5e-41 174.1 123 67.5
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 5.8e-41 173.7 138 68.8
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.4e-39 169.1 150 62.0
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 6.0e-30 137.1 89 77.5
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 1.5e-28 132.5 114 58.8
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 3.7e-27 127.9 98 57.1
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 1.3e-24 119.4 173 39.9
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.3e-24 119.4 75 81.3
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 3.2e-23 114.8 73 82.2
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 3.2e-23 114.8 93 62.4
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 7.2e-23 113.6 93 62.4
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 1.2e-22 112.8 287 31.7
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 1.0e-21 109.8 435 26.2
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 1.8e-21 109.0 387 27.6
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 3.0e-21 108.2 65 87.7
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 6.7e-21 107.1 73 64.4
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 8.8e-21 106.7 164 40.9
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 4.3e-20 104.4 59 86.4
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 1.4e-18 99.4 321 28.0
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 3.1e-18 98.2 79 58.2
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 5.3e-18 97.4 338 24.9
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 7.7e-17 93.6 57 86.0
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 1.3e-16 92.8 285 29.8
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 2.9e-16 91.7 282 29.8
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 9.4e-15 86.7 198 32.3
Haze_27126 Corylus avellana HOM05D001528 ORTHO05D006464 2.7e-14 85.1 350 23.7
MCO09G491 Micromonas commoda HOM05D001528 ORTHO05D022264 4.4e-12 77.8 266 24.4
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 1.7e-11 75.9 284 25.4
Cfa025513 Carpinus fangiana HOM05D001528 ORTHO05D022264 3.7e-11 74.7 298 23.5
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 3.4e-09 68.2 55 58.2
Medtr2057s0010 Medicago truncatula HOM05D001528 ORTHO05D265507 1.6e-06 59.3 161 28.0


User provided reference genes

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