Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 2427.9 1192 100.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1743.8 1196 70.3
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1714.5 1178 69.9
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1673.7 1178 67.9
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1659.0 1178 68.4
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1657.5 1192 67.0
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1612.4 1178 65.8
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1611.3 1179 66.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1605.1 1178 65.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1586.6 1178 64.4
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1585.5 1171 65.3
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1585.1 1177 64.7
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1573.5 1187 64.4
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1573.1 1180 64.7
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1189 64.2
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1567.0 1178 64.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1566.2 1178 64.6
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1186 63.7
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1564.7 1178 64.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1563.5 1177 63.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1186 63.5
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1178 63.6
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1552.7 1178 64.0
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1549.3 1187 63.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1548.9 1178 63.4
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1548.5 1178 63.9
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1548.1 1178 63.4
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1547.7 1218 62.6
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1546.6 1178 63.8
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1544.6 1177 63.8
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1541.6 1188 63.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1540.8 1186 62.6
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1539.6 1179 63.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1539.2 1178 65.2
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1536.9 1189 62.3
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1531.9 1182 62.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1531.5 1184 62.5
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1529.2 1178 63.2
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1528.5 1179 62.9
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1528.1 1193 63.3
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1527.7 1178 64.7
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1520.8 1179 62.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1518.8 1187 62.2
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1518.4 1187 61.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1515.7 1178 62.4
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1515.4 1194 62.0
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1513.4 1179 61.6
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1510.4 1180 61.9
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1501.9 1179 62.1
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1501.9 1192 61.7
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1501.5 1186 61.4
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1500.7 1205 61.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1496.9 1178 61.9
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1493.8 1179 61.9
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1490.7 1178 61.7
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1487.6 1191 60.5
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1485.7 1187 60.6
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1483.4 1179 60.5
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1483.0 1176 61.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1481.1 1196 60.8
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1476.1 1183 61.5
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1476.1 1178 61.0
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1475.7 1192 60.2
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1473.8 1181 60.4
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1473.4 1178 60.9
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1472.6 1181 60.3
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1471.8 1183 61.5
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1467.2 1181 59.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1466.1 1178 61.1
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1466.1 1178 60.5
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1465.3 1178 60.5
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1463.0 1143 61.3
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1461.8 1224 58.2
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1461.8 1178 60.5
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1461.0 1291 57.3
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1461.0 1178 60.6
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1460.7 1180 60.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1452.6 1186 59.9
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1451.8 1178 60.1
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1451.8 1187 60.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1449.5 1178 60.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1444.1 1180 59.6
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1439.9 1177 59.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1438.3 1156 60.9
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1437.9 1188 59.6
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1437.6 1116 63.0
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1434.5 1174 58.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1429.8 1234 56.9
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1426.8 1201 59.0
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1426.4 1251 57.6
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1378.6 1224 55.8
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1373.6 1177 58.5
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1362.8 1269 54.7
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1359.7 1007 65.1
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1320.4 1000 64.0
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1288.1 970 64.3
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1264.6 1194 52.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1238.4 1184 51.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1236.1 986 62.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1231.9 1186 53.5
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1171.8 1152 49.5
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1153.3 1189 52.5
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1137.9 1205 49.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1129.4 1178 50.8
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1092.4 1191 49.5
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 8.1e-302 1040.8 814 61.8
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 9.3e-274 947.6 866 55.5
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 9.0e-269 931.0 799 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 9.6e-263 911.0 1118 44.1
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.0e-251 872.1 718 59.3
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.3e-246 857.4 712 58.8
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 2.7e-241 839.7 1098 42.9
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.8e-211 739.6 565 63.7
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.4e-208 731.1 1147 38.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 4.3e-194 682.9 479 68.7
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.3e-187 661.4 541 61.0
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.1e-181 639.8 466 65.7
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 4.3e-178 629.8 755 45.2
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 4.6e-148 530.0 411 63.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.8e-137 493.4 387 61.8
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 7.4e-130 469.5 716 38.8
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 8.8e-115 419.5 591 42.8
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 2.2e-89 335.1 259 62.5
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 9.2e-80 303.1 380 42.6
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 7.6e-66 256.9 291 49.1
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 9.9e-58 229.9 289 43.3
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.3e-57 229.6 176 61.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 4.0e-51 208.0 293 40.3
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 2.9e-49 201.8 190 52.6
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 6.7e-46 190.7 234 45.3
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 6.9e-35 154.1 130 56.9
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 9.0e-27 127.1 149 49.7
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.8e-19 102.8 135 44.4
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 3.4e-18 98.6 71 59.2
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 7.2e-16 90.9 200 33.0
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 3.1e-11 75.5 311 23.2
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.0e-10 72.8 63 54.0
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.0e-09 70.5 60 55.0
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.9e-08 66.2 68 48.5
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.1e-07 62.8 98 40.8
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 3.9e-06 58.5 45 57.8
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 6.7e-06 57.8 52 57.7
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 6.7e-06 57.8 54 48.1


User provided reference genes

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