Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 4.5e-261 904.0 459 100.0
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 3.6e-125 452.6 436 53.0
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 5.8e-123 445.3 430 55.1
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 2.9e-122 443.0 424 54.5
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 2.1e-120 436.8 462 52.2
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 7.8e-120 434.9 426 53.5
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 1.0e-119 434.5 438 52.7
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 3.0e-119 433.0 425 53.9
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 5.1e-119 432.2 479 50.3
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 1.9e-118 430.3 445 51.7
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.6e-117 426.0 478 50.6
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 6.2e-117 425.2 426 54.0
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 8.1e-117 424.9 481 50.1
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 1.1e-116 424.5 453 51.2
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.1e-116 424.5 469 51.2
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 2.3e-116 423.3 427 53.4
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 5.2e-116 422.2 424 52.4
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 6.8e-116 421.8 435 51.3
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.5e-115 420.6 427 53.2
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 2.0e-115 420.2 461 50.1
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 2.6e-115 419.9 485 48.5
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 3.4e-115 419.5 426 53.3
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 5.8e-115 418.7 430 51.6
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 9.9e-115 417.9 420 51.7
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.3e-114 417.5 462 50.9
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 2.2e-114 416.8 461 49.9
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 2.2e-114 416.8 463 49.0
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 2.2e-114 416.8 458 50.0
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 2.2e-114 416.8 424 52.6
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 2.2e-114 416.8 482 47.9
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 2.9e-114 416.4 461 50.1
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 2.9e-114 416.4 458 49.8
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.9e-114 416.4 438 50.9
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 3.8e-114 416.0 423 51.8
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 1.4e-113 414.1 463 51.8
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 4.1e-113 412.5 458 49.8
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 5.4e-113 412.1 477 48.6
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 5.4e-113 412.1 482 47.5
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 7.1e-113 411.8 471 48.8
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 3.5e-112 409.5 467 50.1
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 3.5e-112 409.5 398 55.0
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 4.6e-112 409.1 427 51.3
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 6.0e-112 408.7 465 51.0
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 6.0e-112 408.7 485 47.0
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 1.3e-111 407.5 411 52.3
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 1.3e-111 407.5 392 56.4
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 1.1e-110 404.4 467 49.3
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 3.3e-110 402.9 450 49.1
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 4.3e-110 402.5 458 49.3
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 5.6e-110 402.1 431 50.8
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 5.6e-110 402.1 466 49.8
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.2e-109 401.0 413 50.8
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 1.2e-109 401.0 446 49.8
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 2.1e-109 400.2 397 53.9
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 6.2e-109 398.7 468 49.4
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 9.0e-108 394.8 447 49.9
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 1.2e-107 394.4 420 50.7
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 2.0e-107 393.7 442 49.3
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 2.0e-107 393.7 466 50.2
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 2.6e-107 393.3 469 46.7
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.6e-107 393.3 461 46.6
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 4.4e-107 392.5 466 50.2
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 4.4e-107 392.5 466 50.2
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 8.4e-106 388.3 429 49.0
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 1.1e-105 387.9 423 50.6
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 1.4e-105 387.5 425 49.4
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.9e-105 387.1 464 46.6
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 2.4e-105 386.7 464 47.6
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 2.4e-105 386.7 421 49.9
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 3.2e-105 386.3 465 47.3
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 7.1e-105 385.2 468 47.4
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 2.1e-104 383.6 465 46.9
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 2.7e-104 383.3 383 52.2
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 3.0e-103 379.8 467 47.5
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 3.9e-103 379.4 486 47.3
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 5.1e-103 379.0 467 47.8
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 6.6e-103 378.6 470 46.0
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 1.1e-102 377.9 449 47.7
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 1.9e-102 377.1 466 46.1
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 7.3e-102 375.2 467 45.0
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 1.4e-100 370.9 466 45.5
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 4.0e-100 369.4 413 49.2
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 4.0e-100 369.4 564 41.1
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 5.3e-100 369.0 464 45.7
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 5.3e-100 369.0 466 45.7
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 1.2e-99 367.9 445 47.0
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 2.6e-99 366.7 464 45.5
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 3.4e-99 366.3 468 45.5
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 7.6e-99 365.2 445 45.8
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 9.9e-99 364.8 413 48.9
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 1.7e-98 364.0 344 57.8
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.1e-94 351.3 360 53.3
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.1e-94 351.3 340 55.0
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 7.4e-94 348.6 464 45.0
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 9.6e-94 348.2 363 51.5
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 3.8e-90 336.3 494 42.5
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 4.8e-85 319.3 447 44.7
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 8.2e-85 318.5 470 41.1
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 1.0e-82 311.6 356 48.6
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 1.0e-82 311.6 356 48.6
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 1.0e-82 311.6 281 55.5
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.4e-81 307.8 258 58.9
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 4.6e-80 302.8 251 61.0
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 5.7e-78 295.8 496 36.7
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 2.8e-77 293.5 361 47.9
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.2e-67 261.5 377 44.0
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 1.5e-67 261.2 344 44.8
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 6.5e-66 255.8 231 57.1
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 8.5e-58 228.8 224 53.6
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 7.4e-54 215.7 292 41.8
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 1.1e-44 185.3 398 35.4
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.1e-44 185.3 175 52.6
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 6.5e-42 176.0 423 30.5
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.6e-40 171.4 236 45.3
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 3.5e-35 153.7 162 51.9
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 3.5e-35 153.7 162 51.9
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.0e-30 137.9 276 36.2
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 7.5e-30 136.0 194 42.8
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 8.6e-26 122.5 113 57.5
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.6e-24 118.2 150 44.7
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 4.0e-23 113.6 118 50.8
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 2.6e-22 110.9 123 47.2
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 5.8e-22 109.8 208 36.5
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 9.8e-22 109.0 180 38.9
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 6.6e-18 96.3 151 39.1
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 3.3e-17 94.0 169 36.1
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.6e-11 75.1 81 54.3
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 6.6e-10 69.7 67 52.2
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-07 60.8 64 45.3


User provided reference genes

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