Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-78 295.4 152 100.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.7e-48 194.1 155 70.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.7e-42 175.3 133 69.9
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 8.2e-42 174.1 115 73.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.4e-41 173.3 112 78.6
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.8e-41 172.9 115 73.0
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 2.4e-41 172.6 116 73.3
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.1e-41 172.2 140 65.7
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 4.1e-41 171.8 115 73.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.1e-41 171.8 115 73.9
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 5.3e-41 171.4 115 73.9
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 5.3e-41 171.4 115 73.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 7.0e-41 171.0 115 72.2
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.1e-41 170.6 128 72.7
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 9.1e-41 170.6 109 77.1
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.6e-40 169.9 115 72.2
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.0e-40 169.5 114 72.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.6e-40 169.1 112 75.0
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 5.9e-40 167.9 115 72.2
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 7.7e-40 167.5 114 71.9
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.0e-39 167.2 114 70.2
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.3e-39 166.8 115 71.3
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.3e-39 166.8 136 65.4
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.3e-39 166.8 112 76.8
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.7e-39 166.4 115 72.2
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.7e-39 166.4 109 75.2
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.2e-39 166.0 114 71.1
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.9e-39 165.6 114 71.1
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.8e-39 165.2 115 73.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.8e-39 165.2 108 74.1
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.8e-39 165.2 108 74.1
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.8e-39 165.2 115 71.3
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 3.8e-39 165.2 127 66.9
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 5.0e-39 164.9 108 73.1
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 5.0e-39 164.9 115 71.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 5.0e-39 164.9 109 73.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 6.5e-39 164.5 133 66.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 8.5e-39 164.1 119 69.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 8.5e-39 164.1 116 73.3
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.1e-38 163.7 115 72.2
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.1e-38 163.7 133 66.2
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.1e-38 163.7 127 66.1
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.1e-38 163.7 115 73.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.1e-38 163.7 115 73.0
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.1e-38 163.7 115 73.0
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.5e-38 163.3 109 77.1
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.9e-38 162.9 115 68.7
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.9e-38 162.9 112 70.5
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.5e-38 162.5 116 72.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.5e-38 162.5 115 69.6
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.2e-38 161.8 115 69.6
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.5e-38 161.4 115 69.6
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 7.2e-38 161.0 116 72.4
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 9.4e-38 160.6 116 71.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 9.4e-38 160.6 115 68.7
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.2e-37 160.2 132 59.8
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.2e-37 160.2 119 69.7
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.2e-37 160.2 109 73.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.2e-37 160.2 115 69.6
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.2e-37 160.2 115 69.6
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.6e-37 159.8 115 68.7
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.7e-37 158.3 102 78.4
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.1e-37 157.9 115 74.8
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 6.1e-37 157.9 114 71.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 8.0e-37 157.5 128 64.1
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.0e-36 157.1 112 67.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.0e-36 157.1 104 73.1
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.0e-36 157.1 115 70.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.4e-36 156.8 115 66.1
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.4e-36 156.8 115 69.6
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.3e-36 156.0 113 68.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-36 156.0 115 67.8
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-36 156.0 113 68.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.3e-36 156.0 113 68.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.3e-36 156.0 115 68.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.3e-36 156.0 115 68.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 3.0e-36 155.6 113 67.3
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.0e-36 155.6 113 67.3
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 3.0e-36 155.6 115 67.8
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 4.0e-36 155.2 115 67.0
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.0e-36 155.2 109 67.9
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 4.0e-36 155.2 109 69.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 5.2e-36 154.8 115 67.0
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 5.2e-36 154.8 95 77.9
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 6.7e-36 154.5 114 66.7
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 6.7e-36 154.5 114 66.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.2e-35 153.7 112 68.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-35 153.7 111 70.3
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.2e-35 153.7 112 69.6
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.5e-35 153.3 115 65.2
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.4e-35 151.8 114 68.4
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 4.4e-35 151.8 114 68.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.7e-35 151.4 115 65.2
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.3e-34 150.2 114 67.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.3e-34 150.2 115 65.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.2e-34 149.4 112 66.1
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 2.2e-34 149.4 117 65.0
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.8e-34 149.1 112 67.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.8e-33 146.4 115 62.6
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 3.5e-32 142.1 95 72.6
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.9e-32 141.4 130 62.3
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.2e-31 139.4 102 63.7
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.1e-30 137.1 115 61.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 9.4e-30 134.0 110 60.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.7e-29 131.7 111 59.5
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.0e-28 130.6 95 69.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.3e-28 129.4 110 61.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.5e-27 126.7 110 60.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 7.5e-27 124.4 140 51.4
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-26 123.2 77 84.4
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.7e-26 123.2 114 57.9
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.3e-26 121.3 100 58.0
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.1e-25 120.6 74 75.7
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 9.1e-25 117.5 104 56.7
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 9.1e-25 117.5 128 50.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.7e-24 115.9 112 53.6
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 7.7e-24 114.4 114 53.5
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.3e-23 113.6 112 53.6
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.8e-23 112.1 129 46.5
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.9e-22 109.8 99 54.5
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.2e-22 107.8 77 66.2
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.3e-20 102.8 109 49.5
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.3e-18 94.7 60 71.7
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.1e-17 92.0 55 78.2
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 5.4e-17 91.7 55 78.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.4e-12 77.0 44 79.5
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.0e-12 75.5 65 60.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.0e-11 73.2 40 82.5
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.7e-10 68.9 38 78.9


User provided reference genes

Program Settings