Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0681G044 Amborella trichopoda HOM05D002575 ORTHO05D009115 3.8e-221 771.2 377 100.0
GSVIVG01032817001 Vitis vinifera HOM05D002575 ORTHO05D009115 1.6e-118 430.3 367 57.2
Cfa001317 Carpinus fangiana HOM05D002575 ORTHO05D009115 3.5e-118 429.1 367 57.8
TAR636G1371 Trochodendron aralioides HOM05D000781 ORTHO05D000643 3.9e-117 425.6 357 57.4
DCAR_024827 Daucus carota HOM05D002575 ORTHO05D009115 1.8e-114 416.8 366 56.3
Prupe.2G250200 Prunus persica HOM05D002575 ORTHO05D009115 2.4e-114 416.4 364 57.4
Lsat_1_v5_gn_2_123440 Lactuca sativa HOM05D002575 ORTHO05D009115 3.1e-114 416.0 364 54.7
Dinv17995 Davidia involucrata HOM05D002575 ORTHO05D009115 6.9e-114 414.8 361 59.8
PSO384G3900 Papaver somniferum HOM05D002575 ORTHO05D009115 9.0e-114 414.5 367 56.9
PSO339G0934 Papaver somniferum HOM05D002575 ORTHO05D009115 2.0e-113 413.3 366 57.4
RcHm_v2.0_Chr1g0370241 Rosa chinensis HOM05D002575 ORTHO05D009115 5.8e-113 411.8 368 57.3
MD00G1166700 Malus domestica HOM05D002575 ORTHO05D009115 9.9e-113 411.0 364 55.5
Aqoxy4G02552 Aquilegia oxysepala HOM05D002575 ORTHO05D009115 2.2e-112 409.8 365 57.0
FAN01G0126 Fragaria x ananassa HOM05D002575 ORTHO05D009115 2.2e-112 409.8 368 57.6
Haze_17227 Corylus avellana HOM05D002575 ORTHO05D009115 2.9e-112 409.5 367 59.7
Duzib128G0837 Durio zibethinus HOM05D002575 ORTHO05D009115 8.4e-112 407.9 364 55.8
HanXRQChr07g0202861 Helianthus annuus HOM05D002575 ORTHO05D009115 1.1e-111 407.5 364 54.7
Potri.010G188700 Populus trichocarpa HOM05D002575 ORTHO05D009115 1.9e-111 406.8 368 59.2
Nn2g10843 Nelumbo nucifera HOM05D002575 ORTHO05D009115 9.3e-111 404.4 366 59.3
FvH4_7g24480 Fragaria vesca HOM05D002575 ORTHO05D009115 1.6e-110 403.7 368 56.5
Eucgr.J00206 Eucalyptus grandis HOM05D002575 ORTHO05D009115 4.6e-110 402.1 367 53.7
FAN06G3971 Fragaria x ananassa HOM05D000781 ORTHO05D009115 1.0e-109 401.0 363 57.9
arahy.Tifrunner.gnm1.ann1.DA4QY1 Arachis hypogaea HOM05D002575 ORTHO05D009115 3.0e-109 399.4 367 53.7
Lj1A955G80 Lonicera japonica HOM05D002575 ORTHO05D009115 8.7e-109 397.9 370 56.2
ECA238G2639 Erigeron canadensis HOM05D002575 ORTHO05D009115 7.4e-108 394.8 364 53.3
Ca_15127_v3 Cicer arietinum L. HOM05D002575 ORTHO05D009115 9.6e-108 394.4 359 53.5
arahy.Tifrunner.gnm1.ann1.1Q70G5 Arachis hypogaea HOM05D002575 ORTHO05D009115 2.8e-107 392.9 367 53.1
Cpa.g.sc19.173 Carica papaya HOM05D002575 ORTHO05D009115 4.8e-107 392.1 359 57.1
Sc10g0002360 Simmondsia chinensis HOM05D002575 ORTHO05D009115 1.1e-106 391.0 365 53.7
Thecc.10G016000 Theobroma cacao HOM05D002575 ORTHO05D009115 4.0e-106 389.0 364 56.3
Peaxi162Scf00825g00235 Petunia axillaris HOM05D002575 ORTHO05D009115 6.9e-106 388.3 362 53.9
Psat5g128320 Pisum sativum HOM05D002575 ORTHO05D009115 1.2e-105 387.5 355 50.4
Lj6g0019077 Lotus japonicus HOM05D002575 ORTHO05D009115 2.6e-105 386.3 363 52.9
Medtr3g070780 Medicago truncatula HOM05D002575 ORTHO05D009115 5.8e-105 385.2 360 51.9
CsaV3_6G001850 Cucumis sativus L. HOM05D002575 ORTHO05D009115 9.9e-105 384.4 367 52.3
VMungo1383G0855 Vigna mungo HOM05D002575 ORTHO05D009115 1.3e-104 384.0 363 52.6
Cc02_g06500 Coffea canephora HOM05D002575 ORTHO05D009115 3.8e-104 382.5 364 56.9
SalBow6G5788 Salvia bowleyana HOM05D002575 ORTHO05D009115 4.9e-104 382.1 373 51.7
Ciclev10030684m.g Citrus clementina HOM05D002575 ORTHO05D009115 8.4e-104 381.3 366 56.3
MELO3C008297.2 Cucumis melo HOM05D002575 ORTHO05D009115 8.4e-104 381.3 367 51.8
Manes.10G012200 Manihot esculenta HOM05D002575 ORTHO05D009115 1.4e-103 380.6 364 53.0
SGA_v2.0_scaffold60G20999 Striga asiatica HOM05D002575 ORTHO05D009115 2.4e-103 379.8 368 55.7
HPP92_013887 Vanilla planifolia HOM05D002575 ORTHO05D009115 2.4e-103 379.8 375 50.7
Sed0014947 Sechium edule HOM05D002575 ORTHO05D009115 7.1e-103 378.3 369 52.8
MBI03_g37290_MAGBIO Magnolia biondii HOM05D002575 ORTHO05D009115 6.0e-102 375.2 362 52.2
Lalb_Chr23g0276911 Lupinus albus HOM05D002575 ORTHO05D009115 1.3e-101 374.0 363 52.6
Oeu028342.1 Olea europaea HOM05D002575 ORTHO05D009115 1.8e-101 373.6 366 55.5
CiPaw.01G298700 Carya illinoinensis HOM05D002575 ORTHO05D009115 2.3e-101 373.2 365 54.8
Ah.16g103570 Amaranthus hybridus HOM05D002575 ORTHO05D009115 3.0e-101 372.9 364 51.4
AUR62022885 Chenopodium quinoa HOM05D002575 ORTHO05D009115 5.1e-101 372.1 384 51.3
ClCG11G006140 Citrullus lanatus HOM05D002575 ORTHO05D009115 8.7e-101 371.3 399 49.4
TWI73G1175 Tripterygium wilfordii HOM05D002575 ORTHO05D009115 8.7e-101 371.3 366 51.1
Gohir.D06G169000 Gossypium hirsutum HOM05D002575 ORTHO05D009115 1.1e-100 370.9 364 54.7
Gorai.010G197800 Gossypium raimondii HOM05D002575 ORTHO05D009115 1.1e-100 370.9 364 54.7
Gohir.A06G163400 Gossypium hirsutum HOM05D002575 ORTHO05D009115 1.9e-100 370.2 364 52.2
Rhsim03G0143800 Rhododendron simsii HOM05D002575 ORTHO05D009115 2.5e-100 369.8 377 50.9
Glyma.11G230200 Glycine max HOM05D002575 ORTHO05D009115 4.3e-100 369.0 363 50.1
Sabra10G0145400 Salix brachista HOM05D002575 ORTHO05D009115 4.3e-100 369.0 450 46.4
AUR62012252 Chenopodium quinoa HOM05D002575 ORTHO05D009115 5.6e-100 368.6 365 55.3
Phvul.001G243400 Phaseolus vulgaris HOM05D002575 ORTHO05D009115 5.6e-100 368.6 355 50.1
TPR.G11205 Trifolium pratense HOM05D002575 ORTHO05D009115 7.4e-100 368.2 355 49.6
Hund13865 Selenicereus undatus HOM05D002575 ORTHO05D009115 2.1e-99 366.7 386 53.4
QL08p063209 Quercus lobata HOM05D002575 ORTHO05D009115 3.7e-99 365.9 463 46.4
CAN.G19.8 Capsicum annuum HOM05D002575 ORTHO05D009115 1.2e-97 360.9 362 53.0
PGR044G2457 Punica granatum HOM05D002575 ORTHO05D009115 4.5e-97 359.0 368 53.8
vmacro06970 Vaccinium macrocarpon HOM05D002575 ORTHO05D009115 1.0e-96 357.8 447 44.5
CARHR207620 Cardamine hirsuta HOM05D002575 ORTHO05D009115 4.9e-96 355.5 367 52.0
Sp6g37233 Schrenkiella parvula HOM05D002575 ORTHO05D009115 1.4e-95 354.0 368 52.7
MSTRG.27331 Avicennia marina HOM05D002575 ORTHO05D009115 2.5e-95 353.2 371 50.1
Sopen06g017550 Solanum pennellii HOM05D002575 ORTHO05D009115 2.5e-95 353.2 364 52.5
CSS0037879 Camellia sinensis var. sinensis HOM05D002575 ORTHO05D009115 4.2e-95 352.4 278 61.9
Solyc06g051570.4 Solanum lycopersicum HOM05D002575 ORTHO05D009115 4.2e-95 352.4 362 52.2
Glyma.18G027000 Glycine max HOM05D002575 ORTHO05D009115 5.5e-95 352.1 308 54.9
CDE02G0569 Ceratophyllum demersum HOM05D002575 ORTHO05D009115 7.9e-94 348.2 378 48.9
THA.LOC104816547 Tarenaya hassleriana HOM05D002575 ORTHO05D009115 1.1e-92 344.4 362 49.7
EL10Ac2g04832 Beta vulgaris HOM05D002575 ORTHO05D009115 2.4e-90 336.7 366 52.2
AT5G05660 Arabidopsis thaliana HOM05D002575 ORTHO05D009115 2.6e-89 333.2 365 50.7
Os01g0158900 Oryza sativa ssp. japonica HOM05D002575 ORTHO05D009115 7.6e-89 331.6 369 48.8
BolC9t59881H Brassica oleracea HOM05D002575 ORTHO05D009115 2.2e-88 330.1 366 50.8
Thhalv10012642m.g Eutrema salsugineum HOM05D002575 ORTHO05D009115 3.8e-88 329.3 365 50.1
Aa31LG11G6680 Aethionema arabicum HOM05D002575 ORTHO05D009115 1.4e-87 327.4 367 46.6
Carub.0006s0455 Capsella rubella HOM05D002575 ORTHO05D009115 1.9e-87 327.0 365 50.1
AL6G15550 Arabidopsis lyrata HOM05D002575 ORTHO05D009115 5.5e-87 325.5 365 49.9
HPP92_013879 Vanilla planifolia HOM05D002575 ORTHO05D009115 5.5e-87 325.5 375 46.1
A10p30700 Brassica napus HOM05D002575 ORTHO05D009115 1.6e-86 323.9 365 49.6
BraA10t45111Z Brassica rapa HOM05D002575 ORTHO05D009115 1.6e-86 323.9 365 49.9
C09p71190 Brassica napus HOM05D002575 ORTHO05D009115 7.9e-86 321.6 366 50.3
BcaC06g32271 Brassica carinata HOM05D002575 ORTHO05D009115 1.1e-84 317.8 366 49.7
Migut.F00683 Erythranthe guttata HOM05D002575 ORTHO05D009115 1.9e-79 300.4 362 48.6
MD07G1222000 Malus domestica HOM05D002575 ORTHO05D009115 3.7e-75 286.2 306 49.0
Mapoly0154s0047 Marchantia polymorpha HOM05D002575 ORTHO05D009115 3.1e-74 283.1 366 41.5
Pp3c2_24250 Physcomitrium patens HOM05D002575 ORTHO05D009115 1.7e-72 277.3 413 36.8
Actinidia29702 Actinidia chinensis HOM05D002575 ORTHO05D009115 3.0e-69 266.5 220 61.8
Nitab4.5_0000666g0080 Nicotiana tabacum HOM05D002575 ORTHO05D009115 1.4e-61 241.1 349 40.4
Zm00001eb336160 Zea mays HOM05D002575 ORTHO05D009115 3.5e-57 226.5 215 54.9
SMO230G0013 Selaginella moellendorffii HOM05D002575 ORTHO05D009115 4.7e-54 216.1 260 41.2
FAN10G0420 Fragaria x ananassa HOM05D002575 ORTHO05D009115 1.2e-52 211.5 173 61.8
CBR_g3071 Chara braunii HOM05D002575 ORTHO05D009115 8.3e-51 205.3 417 32.1
FAN03G0699 Fragaria x ananassa HOM05D000781 ORTHO05D009115 3.1e-50 203.4 173 59.5
Nitab4.5_0001032g0040 Nicotiana tabacum HOM05D002575 ORTHO05D009115 3.5e-49 199.9 379 33.8
PGSC0003DMG400019018 Solanum tuberosum HOM05D002575 ORTHO05D009115 6.5e-48 195.7 213 48.8
Cre03.g163200 Chlamydomonas reinhardtii HOM05D002575 ORTHO05D009115 2.0e-28 131.0 247 31.6
Actinidia33924 Actinidia chinensis HOM05D002575 ORTHO05D009115 1.9e-23 114.4 191 38.7
Atru.chr12.35 Acer truncatum HOM05D002575 ORTHO05D009115 7.5e-20 102.4 255 31.4
COL.COLO4_25727 Corchorus olitorius HOM05D002575 ORTHO05D009115 4.7e-14 83.2 55 63.6
VMungo1127G1914 Vigna mungo HOM05D003214 ORTHO05D023725 6.2e-14 82.8 53 66.0
AUR62010919 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.0e-12 77.8 112 39.3
SEGI_36190 Sequoiadendron giganteum HOM05D002575 ORTHO05D009115 7.6e-12 75.9 101 39.6
HanXRQChr01g0030461 Helianthus annuus HOM05D002575 ORTHO05D005851 4.6e-09 66.6 228 27.6
HanXRQChr01g0030941 Helianthus annuus HOM05D002575 ORTHO05D005851 4.6e-09 66.6 228 27.6
MD14G1238900 Malus domestica HOM05D002575 ORTHO05D005851 6.0e-09 66.2 197 25.9
RcHm_v2.0_Chr7g0178011 Rosa chinensis HOM05D002575 ORTHO05D005851 3.0e-08 63.9 216 27.3
HanXRQChr01g0030921 Helianthus annuus HOM05D002575 ORTHO05D005851 3.9e-08 63.5 227 27.3
MD06G1232100 Malus domestica HOM05D002575 ORTHO05D005851 6.6e-08 62.8 197 24.9
CARHR010270 Cardamine hirsuta HOM05D002575 ORTHO05D005851 1.9e-07 61.2 193 24.4
ECA233G4261 Erigeron canadensis HOM05D002575 ORTHO05D005851 4.3e-07 60.1 220 28.2
THA.LOC104814365 Tarenaya hassleriana HOM05D002575 ORTHO05D005851 4.3e-07 60.1 194 26.3
Thecc.04G023100 Theobroma cacao HOM05D002575 ORTHO05D005851 5.6e-07 59.7 208 24.5
Thhalv10006632m.g Eutrema salsugineum HOM05D002575 ORTHO05D005851 7.3e-07 59.3 218 27.5
SGA_v2.0_scaffold40G15642 Striga asiatica HOM05D002575 ORTHO05D005851 7.3e-07 59.3 206 24.3
Thecc.03G042800 Theobroma cacao HOM05D002575 ORTHO05D005851 7.3e-07 59.3 206 24.3
Medtr6g071140 Medicago truncatula HOM05D002575 ORTHO05D005851 9.6e-07 58.9 209 25.4
Zm00001eb371520 Zea mays HOM05D002575 ORTHO05D005851 1.6e-06 58.2 284 23.6
Migut.D01221 Erythranthe guttata HOM05D002575 ORTHO05D005851 2.8e-06 57.4 185 25.9
Os06g0252300 Oryza sativa ssp. japonica HOM05D002575 ORTHO05D005851 3.6e-06 57.0 212 25.5
THA.LOC104798618 Tarenaya hassleriana HOM05D002575 ORTHO05D005851 3.6e-06 57.0 215 23.7
ATR0753G085 Amborella trichopoda HOM05D002575 ORTHO05D005851 6.2e-06 56.2 199 27.1
Sopen03g037310 Solanum pennellii HOM05D002575 ORTHO05D005851 6.2e-06 56.2 233 25.3
SalBow3G3712 Salvia bowleyana HOM05D002575 ORTHO05D005851 8.1e-06 55.8 187 25.7
Sc09g0000650 Simmondsia chinensis HOM05D002575 ORTHO05D005851 8.1e-06 55.8 227 25.1


User provided reference genes

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