Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 2.1e-269 931.8 470 100.0
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 9.9e-203 710.3 469 74.2
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 8.6e-199 697.2 469 73.6
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 2.0e-195 686.0 470 71.9
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.4e-195 685.3 469 71.2
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 9.9e-195 683.7 470 72.3
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.9e-194 682.2 471 71.1
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 4.9e-194 681.4 470 70.9
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 8.4e-194 680.6 470 71.9
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 1.4e-193 679.9 470 70.4
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 1.9e-193 679.5 470 70.4
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 1.9e-193 679.5 470 70.4
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 9.2e-193 677.2 471 71.8
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 9.2e-193 677.2 470 69.6
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 9.2e-193 677.2 470 69.6
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 1.2e-192 676.8 471 71.8
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.2e-192 676.8 483 69.2
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 2.1e-192 676.0 470 70.0
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 4.6e-192 674.9 470 70.2
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 6.0e-192 674.5 470 69.6
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 5.1e-191 671.4 470 70.9
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.5e-190 669.1 470 68.7
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 1.2e-189 666.8 470 70.2
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 1.2e-189 666.8 470 68.9
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 3.6e-189 665.2 469 69.7
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 1.1e-188 663.7 471 69.2
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 1.4e-188 663.3 471 69.6
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 2.4e-188 662.5 470 69.1
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 5.2e-188 661.4 468 68.4
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 6.9e-188 661.0 470 68.7
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 9.0e-188 660.6 471 69.4
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 9.0e-188 660.6 470 68.5
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 4.4e-187 658.3 470 68.7
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 4.4e-187 658.3 470 70.2
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 7.6e-187 657.5 475 68.8
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.3e-186 656.8 470 68.3
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.7e-186 656.4 473 69.8
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 2.9e-186 655.6 470 68.7
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.4e-186 654.1 484 67.6
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 8.4e-186 654.1 470 68.9
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 2.4e-185 652.5 468 67.7
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 3.2e-185 652.1 470 67.2
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 4.2e-185 651.7 470 67.7
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 5.4e-185 651.4 472 69.1
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 7.1e-185 651.0 471 68.4
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 9.3e-185 650.6 468 66.9
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 2.1e-184 649.4 468 66.9
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.1e-184 649.4 472 67.6
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 2.7e-184 649.0 468 67.1
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 3.5e-184 648.7 468 68.8
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 3.5e-184 648.7 500 65.2
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 4.6e-184 648.3 468 67.5
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 4.6e-184 648.3 473 68.5
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 1.0e-183 647.1 470 68.7
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 1.3e-183 646.7 468 66.7
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 2.3e-183 646.0 471 67.5
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 3.9e-183 645.2 470 67.4
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 1.1e-182 643.7 468 66.7
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.1e-182 643.7 474 68.1
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.1e-182 643.7 503 64.2
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.6e-181 639.8 468 66.9
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 2.4e-180 636.0 468 65.4
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 9.0e-180 634.0 469 65.5
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 2.2e-178 629.4 477 66.5
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 2.2e-178 629.4 462 65.6
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 7.9e-176 620.9 493 62.3
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 1.0e-175 620.5 499 63.7
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 5.1e-175 618.2 477 65.4
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.5e-174 616.7 504 62.9
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 3.4e-171 605.5 429 70.2
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 7.6e-171 604.4 489 62.6
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 2.5e-169 599.4 485 64.3
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 5.5e-169 598.2 470 65.3
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 1.6e-168 596.7 470 63.8
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 2.7e-168 595.9 473 63.6
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 8.7e-167 590.9 497 61.0
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.1e-166 590.5 470 64.5
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 6.2e-165 584.7 476 63.4
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 8.2e-165 584.3 425 68.2
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 2.4e-164 582.8 494 61.1
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.2e-160 570.5 458 62.2
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.1e-156 557.4 533 55.7
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 5.3e-156 555.1 559 53.8
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 2.6e-155 552.7 470 60.2
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 2.6e-155 552.7 417 65.7
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.9e-154 549.3 528 56.4
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 1.2e-152 543.9 471 60.1
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 7.9e-152 541.2 419 64.9
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.8e-151 540.0 468 60.3
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 8.8e-151 537.7 402 66.4
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 2.8e-149 532.7 381 70.1
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 6.3e-149 531.6 508 56.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.8e-148 530.0 470 60.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.7e-146 523.5 450 61.6
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 9.4e-145 517.7 473 53.9
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 5.3e-140 501.9 355 69.3
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 1.0e-138 497.7 473 53.7
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 6.7e-135 485.0 504 52.0
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 1.8e-132 476.9 343 68.8
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.1e-121 441.0 472 47.9
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 3.4e-118 429.5 314 67.8
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 5.9e-115 418.7 314 66.6
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.3e-114 417.5 506 47.6
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.7e-114 417.2 435 52.0
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.9e-113 413.7 465 47.1
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 1.8e-111 407.1 465 45.2
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.7e-101 374.0 361 56.0
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 8.0e-96 355.1 286 62.9
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 5.2e-95 352.4 247 72.5
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.6e-94 350.1 277 65.3
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 9.5e-89 331.6 451 43.5
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.2e-78 298.1 223 66.4
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.8e-72 276.9 258 58.5
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 3.2e-68 263.5 226 56.6
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 1.4e-63 248.1 236 56.8
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 7.6e-62 242.3 300 46.3
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 5.4e-60 236.1 478 32.2
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.6e-59 234.6 519 32.2
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.1e-59 234.2 204 58.3
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 3.5e-59 233.4 175 64.6
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 9.6e-57 225.3 148 70.9
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 2.2e-53 214.2 343 40.8
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 3.8e-53 213.4 474 31.9
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 4.2e-52 209.9 552 28.1
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.0e-46 191.0 132 69.7
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 9.4e-36 155.6 98 72.4
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.4e-36 155.6 109 64.2
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.4e-36 155.6 109 64.2
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 3.7e-32 143.7 111 67.6
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.1e-31 142.1 136 56.6
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.4e-30 137.1 96 63.5
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.9e-20 104.8 78 62.8
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.2e-19 102.1 58 79.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 6.1e-19 99.8 73 63.0
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 8.0e-19 99.4 81 60.5
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 5.2e-18 96.7 69 63.8
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.3e-16 92.0 62 69.4
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 1.3e-16 92.0 183 38.3
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 1.4e-15 88.6 58 69.0
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.5e-14 84.0 58 65.5
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.5e-13 79.3 57 71.9
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 5.5e-12 76.6 61 57.4
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 6.1e-11 73.2 71 59.2
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 6.1e-11 73.2 53 62.3
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.6e-06 58.5 38 71.1
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 3.5e-06 57.4 88 39.8
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 5.9e-06 56.6 39 69.2


User provided reference genes

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