Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 2325.8 1194 100.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1232.6 1209 58.2
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1223.8 1212 58.3
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1186.8 1216 55.8
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1172.5 1212 55.6
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1171.0 1260 54.1
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1167.9 1111 58.6
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1164.4 1214 55.4
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1164.1 1214 55.4
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1159.4 1079 59.1
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1158.7 1299 53.2
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1156.7 1207 55.8
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1156.4 957 65.0
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1148.7 1236 54.4
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1142.9 1211 55.2
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1141.7 1218 53.9
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1139.0 914 66.7
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1137.9 1076 58.1
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1132.9 1083 57.7
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1130.9 1229 54.6
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1129.0 912 65.2
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1127.9 1224 54.2
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1127.1 1274 52.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1124.4 1228 53.4
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1121.3 1201 53.8
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1120.5 1106 56.1
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1120.1 1069 58.0
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1118.6 1099 57.1
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1117.4 929 65.2
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1115.5 1198 53.5
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1115.1 1207 54.3
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1114.8 1216 53.5
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1114.8 1219 53.4
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1114.8 1086 57.2
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1114.0 1217 52.7
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1113.6 909 64.0
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1113.2 1095 56.8
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1112.4 1054 58.3
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1110.9 1182 55.0
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1108.6 878 66.2
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1104.7 1095 56.6
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1104.7 1122 55.6
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1104.0 1213 53.3
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1101.7 1217 53.3
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1099.3 1215 53.0
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1097.8 1222 53.4
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1097.4 1263 51.4
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1097.4 916 63.6
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1094.7 1073 58.1
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1093.6 1031 59.9
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1091.6 1037 59.8
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1090.9 1031 58.6
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1086.2 1038 59.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1083.9 1216 52.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1080.5 1200 52.8
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1080.1 946 62.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1077.0 1091 56.8
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 4.4e-308 1061.6 1142 53.8
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.4e-306 1056.6 1302 49.8
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 2.1e-305 1052.7 1231 50.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 3.9e-304 1048.5 1218 51.3
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 5.1e-304 1048.1 1222 50.7
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 2.1e-302 1042.7 1138 54.4
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 6.2e-302 1041.2 1116 53.5
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 8.1e-302 1040.8 1224 50.7
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 1.4e-301 1040.0 1174 52.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 2.4e-301 1039.3 1024 56.7
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 5.8e-300 1034.6 1220 51.3
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-298 1028.5 932 61.4
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 6.2e-294 1014.6 1090 54.8
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 4.4e-292 1008.4 875 63.3
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.6e-292 1007.7 987 58.3
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.6e-289 1000.0 1053 54.0
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.6e-286 988.8 1019 56.5
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.3e-280 970.3 806 63.8
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.6e-278 963.4 1317 45.6
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.5e-276 955.3 820 62.0
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.2e-273 947.2 1003 53.1
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.6e-273 945.3 854 60.1
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.0e-272 944.1 1020 53.5
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 3.3e-271 939.1 839 62.0
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.9e-267 926.0 992 52.4
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.1e-266 924.1 821 61.4
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 1.1e-263 914.1 1030 52.7
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 5.9e-260 901.7 1003 53.3
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 7.9e-249 864.8 932 54.6
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 4.8e-246 855.5 928 54.1
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 8.8e-240 834.7 1203 44.0
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.7e-239 832.0 909 51.7
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 3.7e-238 829.3 693 62.6
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 2.4e-237 826.6 691 62.5
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.0e-233 811.6 911 50.9
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 7.5e-231 805.1 756 61.0
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 9.8e-223 778.1 1072 46.0
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.2e-215 754.6 597 66.0
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-208 730.3 633 63.2
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 2.6e-207 726.9 616 62.5
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 4.9e-182 642.9 642 57.3
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.5e-175 621.3 498 66.7
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.9e-174 617.1 478 66.1
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 7.1e-165 585.9 964 42.5
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.3e-163 580.9 745 45.8
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 2.6e-159 567.4 483 63.1
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-144 518.8 415 64.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.5e-143 515.0 743 43.7
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-122 445.7 390 59.7
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.5e-117 427.9 404 58.9
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 4.1e-112 410.6 348 60.9
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-95 355.5 288 67.0
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-90 339.3 321 62.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.3e-86 325.9 389 45.2
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.4e-64 250.8 477 38.6
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.2e-57 228.8 705 29.6
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.4e-57 226.9 227 60.8
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.7e-54 217.2 246 50.0
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 8.7e-54 216.9 151 72.8
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 4.3e-53 214.5 209 56.9
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.4e-51 208.8 344 40.7
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.5e-50 206.1 182 65.9
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 9.9e-50 203.4 228 48.7
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 9.9e-50 203.4 229 52.0
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.2e-48 198.4 152 67.1
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 5.5e-48 197.6 165 59.4
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 7.1e-48 197.2 165 60.6
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 7.1e-48 197.2 699 28.0
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.1e-48 197.2 187 57.2
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 6.7e-46 190.7 669 29.1
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.1e-45 189.9 722 28.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-43 182.6 843 25.9
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.6e-42 178.7 753 26.6
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.2e-41 175.6 710 26.6
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.2e-41 175.6 145 64.1
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 1.4e-40 172.9 147 59.9
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-40 172.6 260 44.6
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.6e-39 169.5 159 59.1
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.0e-39 167.5 482 32.2
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 3.7e-36 158.3 261 42.5
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 4.8e-36 157.9 122 63.9
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 5.3e-35 154.5 184 50.5
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 3.4e-34 151.8 109 70.6
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.0e-30 140.2 833 23.6
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.1e-30 137.9 158 50.6
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 4.3e-29 134.8 795 24.5
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.9e-27 127.5 755 23.8
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.5e-24 119.0 477 27.3
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.2e-23 116.7 671 25.2
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 4.7e-23 114.8 110 59.1
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 2.8e-20 105.5 73 65.8
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-19 103.2 292 28.8
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.8e-19 102.8 82 61.0
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 4.1e-19 101.7 105 47.6
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 6.9e-19 100.9 260 29.2
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 9.1e-19 100.5 131 45.0
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 4.2e-16 91.7 69 69.6
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.0e-15 87.4 449 25.6
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.0e-13 82.8 121 38.8
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.5e-08 66.6 94 40.4
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-06 60.1 86 38.4
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 3.0e-06 58.9 95 38.9


User provided reference genes

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